DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Grik2

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_062182.1 Gene:Grik2 / 54257 RGDID:2733 Length:908 Species:Rattus norvegicus


Alignment Length:496 Identity:98/496 - (19%)
Similarity:177/496 - (35%) Gaps:120/496 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 TWETQSAM----SSKMR------NLKGREVVIGIFDYKPFMLLDYEKPPLY-YDRFMNTTDVTID 260
            ||:..|.:    |.|.:      :|..|.:::.....:|::|......||| .|||        :
  Rat   404 TWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRF--------E 460

  Fly   261 GTDIQLMLIFCELYNCTIQVDTSEPYDWG---DIYLNASGYGLVGMILDRRNDYGVGGMYLWYEA 322
            |..|.|:.....:...|.::...|...:|   |:  |....|:|..::|.:.|..|..:.:.|..
  Rat   461 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDV--NGQWNGMVRELIDHKADLAVAPLAITYVR 523

  Fly   323 YEYMDMTHFLGRSGVTCLVPAPN----RLISWTLLLRPFQFVLWMCVMLCLLLESLALGITRR-- 381
            .:.:|.:......|::.|...||    .:.|:   |.|....:||.|:|..|..|..|.:..|  
  Rat   524 EKVIDFSKPFMTLGISILYRKPNGTNPGVFSF---LNPLSPDIWMYVLLACLGVSCVLFVIARFS 585

  Fly   382 ---WEH-------SSVAAGN-SWISSLRFGCISTLKLFVNQSTNYVTSSYALRTVLVASYMIDII 435
               |.:       |.|...| :.::|..||    :...:.|.:..:..:.:.|.|....:...:|
  Rat   586 PYEWYNPHPCNPDSDVVENNFTLLNSFWFG----VGALMRQGSELMPKALSTRIVGGIWWFFTLI 646

  Fly   436 LTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVY 500
            :.:.|:..|||.||:..:|...||...|.....|..|..:           |...:...:..::.
  Rat   647 IISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVE-----------DGATMTFFKKSKIS 700

  Fly   501 DANLISAFSHTEQMGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYF---AFTVAFV------ 556
            ..:.:.||..:.:...:|:       .|.|.|:       :::..|..|   :.|:.||      
  Rat   701 TYDKMWAFMSSRRQSVLVK-------SNEEGIQ-------RVLTSDYAFLMESTTIEFVTQRNCN 751

  Fly   557 -----------------PRLWPHLNAYNDFILAWHSSG-----FDKFWEWKIAAEYMNAHRQNRI 599
                             |...|:.:.....||.....|     .:|:|            |.|..
  Rat   752 LTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWW------------RGNGC 804

  Fly   600 VASEKTNLDIGPVKLGIDNFIGLILLWCFGMICSLLTFLGE 640
            ...|.....    .||:.|..|:.::...|::.|:...:||
  Rat   805 PEEESKEAS----ALGVQNIGGIFIVLAAGLVLSVFVAVGE 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Grik2NP_062182.1 PBP1_iGluR_Kainate 37..414 CDD:380605 3/9 (33%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:473866 81/423 (19%)

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