DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Gria3

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_058582.4 Gene:Gria3 / 53623 MGIID:95810 Length:888 Species:Mus musculus


Alignment Length:151 Identity:41/151 - (27%)
Similarity:56/151 - (37%) Gaps:50/151 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 IMRGIQGALIVASILQIVVGFS-GLWRNVVRLLSPLSAVPLVALAGFGLYEHGFPLLAKC----- 197
            ::.||.||     :||..:..| |.|..     |.|..|  :.|.|.||.|....|::..     
Mouse    87 VLLGILGA-----VLQWAMEPSGGHWSE-----SMLQRV--LHLIGMGLVEEQQHLISSAEDYND 139

  Fly   198 ------IEIGLP--------EIILLLLFSQYIPHLIRGERQVFHRFAVIFSVVIVWIYAHLLTVG 248
                  ::|..|        .|:.||...|..|||            .:...:|.||   |.|| 
Mouse   140 TNFNFTLKISRPGEAPANTASILALLETLQNAPHL------------EVHKDMIRWI---LKTV- 188

  Fly   249 GAY-KNTGVNTQTSCRTDRSG 268
             || |.|...|.::..:|.||
Mouse   189 -AYIKTTRECTASAPPSDSSG 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Gria3NP_058582.4 PBP1_iGluR_AMPA_GluR3 29..403 CDD:380610 41/151 (27%)
PBP2_iGluR_AMPA 416..799 CDD:270433
Blue background indicates that the domain is not in the aligned region.

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