DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76a and Gria1

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_113796.1 Gene:Gria1 / 50592 RGDID:621531 Length:907 Species:Rattus norvegicus


Alignment Length:257 Identity:54/257 - (21%)
Similarity:96/257 - (37%) Gaps:51/257 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 GLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR----LISWTLLLRPFQF 359
            |:||.::..|.|..|..:.:.....|.:|.:......|::.::..|.:    :.|:   |.|..:
  Rat   476 GMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSF---LDPLAY 537

  Fly   360 VLWMCVMLCLLLESLALGITRR-----WEHSSVAAGNSWIS---SLRFGCIS----TLKLFVNQS 412
            .:|||::...:..|:.|.:..|     |.......|....:   |..||..:    :|..|:.|.
  Rat   538 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQG 602

  Fly   413 TNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGTSQAW 477
            .:....|.:.|.|....:...:|:.:.|:..|||.||:..:....:|.:.|.....|..||.:|.
  Rat   603 CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAG 667

  Fly   478 IT---------TIDE------RSADPVLLGLMEHYRVYDANLISAFSHTEQMGFVVERLQFG 524
            .|         .:.|      :||:|                 |.|..|.:.|.:..|...|
  Rat   668 STKEFFRRSKIAVFEKMWTYMKSAEP-----------------SVFVRTTEEGMIRVRKSKG 712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Gria1NP_113796.1 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 54/257 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.