DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and grin2da

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_009292354.1 Gene:grin2da / 449864 ZFINID:ZDB-GENE-041008-124 Length:1916 Species:Danio rerio


Alignment Length:421 Identity:85/421 - (20%)
Similarity:157/421 - (37%) Gaps:119/421 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 DIYLNASG----------YGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAP 344
            |:||..:|          .|:||.::.:|.|..:|.:.:..|..|.::.:.....:|::.:|...
Zfish   525 DLYLVTNGRHGKNIDGQWNGMVGEVVSKRADMAIGSLTINEERSEVVEFSVPFVETGISVMVSRS 589

  Fly   345 NRLISWTLLLRPFQFVLW-MCVMLCLLLESLA---------LGITRRWEHSSVAAGNSWISSLRF 399
            |..:|.:..|.|:...:| |..::||.:.::.         :|..|..:....|.|:.:......
Zfish   590 NGTVSPSAFLEPYSPAVWVMMFVMCLSVVAVTVFIFEFFSPVGYNRSLQSGKTAGGSKFTIGKSI 654

  Fly   400 GCISTLKLFVN----QSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSR 460
            ..:..| :|.|    ::....||..   .|||.::...|.|.: |:..|||.:   ..||..|:.
Zfish   655 WLLWAL-VFNNSVPVENPRGTTSKI---MVLVWAFFAVIFLAS-YTANLAAFM---IQEEYIDTV 711

  Fly   461 QRLFDHKL--------------IWTGTSQ-----------AWITTIDERSADPVL----LGLMEH 496
            ..|.|.|.              :..|:::           .::...::|..:..:    .|.::.
Zfish   712 SGLSDKKFQHPTEQYPPLRFGTVPNGSTEENIRSNYPNMHQYMVRNNQRGVEDAIENLKTGKLDA 776

  Fly   497 YRVYDANLISAFSHTEQMGFVVERLQFGHLGNT-----ELIENDALKR------LKLMVDDIYFA 550
            : :|||.:::..:..:: |..|..:..|.:..|     .|.:|...||      |:|:.||    
Zfish   777 F-IYDAAVLNYMARKDE-GCKVMTIGSGKVFATTGYGVALHKNSRWKRPLDLALLQLVGDD---- 835

  Fly   551 FTVAFVPRLWPHLNAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLG 615
             .:..:.|||.....:||.|                  |.|::                   ||.
Zfish   836 -EIDMLERLWLSGICHNDKI------------------EVMSS-------------------KLD 862

  Fly   616 IDNFIGLILLWCFGMICSLLTFLGE---LWR 643
            |||..|:..:....|..|||.|..|   .|:
Zfish   863 IDNMAGVFYMLLVAMGLSLLVFAWEHLVYWK 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
grin2daXP_009292354.1 PBP1_iGluR_NMDA_NR2 42..441 CDD:107373
PBP2_iGluR_NMDA_Nr2 452..851 CDD:270436 67/340 (20%)
HisJ <507..>590 CDD:223904 14/64 (22%)
Lig_chan 605..877 CDD:278489 60/323 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591659
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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