DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and gria3b

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_938174.1 Gene:gria3b / 368416 ZFINID:ZDB-GENE-030616-53 Length:883 Species:Danio rerio


Alignment Length:342 Identity:67/342 - (19%)
Similarity:120/342 - (35%) Gaps:86/342 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 FEIKTNRFVGPRNFNKNPEPVEFYILQRF----DAKGTKATWETQSAMSSKMRNLKGREVVIGIF 231
            :|:||.   |||......|      .:||    |.:.|..        ||.:.|   |.:|:...
Zfish   376 YEMKTG---GPRKIGYWNE------FERFVNIMDQQFTND--------SSSVEN---RTIVVTTI 420

  Fly   232 DYKPFMLLDYEKPPLYYDRFMNTTDVTID---------GTDIQLMLIFCELYNCTIQVDTSEPYD 287
            ...|:::  |:|..::.:.........:|         |...:|.::....|...    ..|...
Zfish   421 MEAPYVM--YKKNHMHLEGNEKYEGYCVDLASEIAKHVGIKYRLSIVMDGKYGAR----DPETKS 479

  Fly   288 WGDIYLNASGYGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR----LI 348
            |.         |:||.::..|.|..|..:.:.....|.:|.:......|::.::..|.:    :.
Zfish   480 WN---------GMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVF 535

  Fly   349 SWTLLLRPFQFVLWMCVMLCLLLESLALGITRR-----WE----------------HSSVAAGNS 392
            |:   |.|..:.:|||::...:..|:.|.:..|     |:                .:.....||
Zfish   536 SF---LDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWQLDETDEVKDPQTPPDPPNDFGIFNS 597

  Fly   393 -WISSLRFGCISTLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEA 456
             |.|         |..|:.|..:....|.:.|.|....:...:|:.:.|:..|||.||:..:...
Zfish   598 LWFS---------LGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSP 653

  Fly   457 ADSRQRLFDHKLIWTGT 473
            .:|.:.|.....|..||
Zfish   654 IESAEDLAKQTEIAYGT 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
gria3bNP_938174.1 Periplasmic_Binding_Protein_Type_1 25..396 CDD:299141 8/28 (29%)
ANF_receptor 36..379 CDD:279440 1/2 (50%)
PBP2_iGluR_AMPA 412..794 CDD:270433 54/289 (19%)
Lig_chan 544..824 CDD:278489 29/136 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591771
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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