DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and GluRIIE

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:383 Identity:79/383 - (20%)
Similarity:145/383 - (37%) Gaps:87/383 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 GLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR----LISWTLLLRPFQF 359
            |::..|:..|.|..:..:.:..|..:.:|.|......|:..|...|.:    |.::   :.||..
  Fly   489 GMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTF---MDPFSE 550

  Fly   360 VLWMCVMLCLLLESLALGITRR-----WEH------------SSVAAGNS-WISSLRFGCISTLK 406
            .:|..:....|..||:..|..|     |::            :....||| |.         |..
  Fly   551 EVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWF---------TTG 606

  Fly   407 LFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHK--LI 469
            ..:.|.:.....:.:.|||....:...:|:.:.|:..|||.||:...:...:|...|.|:|  ::
  Fly   607 ALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVV 671

  Fly   470 W----TG-TSQAWITTIDER--------SADPVLLGLMEHYRVYD----ANLISAFSHTEQMGFV 517
            :    || |...::|:.:||        |.:|       .|...|    .|.:...:|   ..|:
  Fly   672 YGAKKTGSTRNFFMTSAEERYKKMNKFMSENP-------QYLTEDNMEGVNRVKTNTH---YAFL 726

  Fly   518 VERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVAFVPRLWPHLNAYNDFILAWHSSGF---- 578
            :|.....:  ||:...|  ||::...:|:..:...:.   :.|||...:|:.:|.....|.    
  Fly   727 MESTSIEY--NTKRECN--LKKIGDALDEKGYGIAMR---KDWPHRGKFNNALLELQEQGVLEKM 784

  Fly   579 -DKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGIDNFIGLILLWCFGMICSLL 635
             :|:|.          .....|.|:::...|..|  |.::|..|:..:...|..|:||
  Fly   785 KNKWWN----------EVGTGICATKEDAPDATP--LDMNNLEGVFFVLLVGSCCALL 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 40..402 CDD:380605
PBP2_iGluR_Kainate 419..790 CDD:270432 67/329 (20%)
Lig_chan 551..824 CDD:459656 62/310 (20%)
Blue background indicates that the domain is not in the aligned region.

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