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Protein Alignment Ir76a and Gria3

DIOPT Version :9

Sequence 1:	NP_001097647.3	Gene:	Ir76a / 40157	FlyBaseID:	FBgn0260874	Length:	646	Species:	Drosophila melanogaster
Sequence 2:	NP_001106213.1	Gene:	Gria3 / 29628	RGDID:	70958	Length:	888	Species:	Rattus norvegicus

Alignment Length:	311	Identity:	60/311 - (19%)
Similarity:	112/311 - (36%)	Gaps:	75/311 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly   299 GLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR----LISWTLLLRPFQF 359
            |:||.::..|.|..|..:.:.....|.:|.:......|::.::..|.:    :.|:   |.|..:
  Rat   486 GMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSF---LDPLAY 547

  Fly   360 VLWMCVMLCLLLESLALGITRR-----WE-----------HSSVAAGNSW--ISSLRFGCISTLK 406
            .:|||::...:..|:.|.:..|     |.           .|.....|.:  .:||.|    :|.
  Rat   548 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWF----SLG 608

  Fly   407 LFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILT----LPTLEEAAD--------- 458
            .|:.|..:....|.:.|.|....:...:|:.:.|:..|||.||    :..:|.|.|
  Rat   609 AFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAY 673

  Fly   459 ------------SRQRLFDHKLIWTGTSQAWITTIDERSADPV-------------LLGLMEHY- 497
                        .|.::..::.:|:....|..:...:.:||.|             |...|..|
  Rat   674 GTLDSGSTKEFFRRSKIAVYEKMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYI 738

  Fly   498 -RVYDANLISAFSHTEQMGFVVERLQFGHLGNT------ELIENDALKRLK 541
             :....:.:....:.:..|:.|...:...|||.      :|.|...|.:||
  Rat   739 EQRKPCDTMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLK 789

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.