DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Gria2

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_058957.1 Gene:Gria2 / 29627 RGDID:61862 Length:883 Species:Rattus norvegicus


Alignment Length:497 Identity:97/497 - (19%)
Similarity:178/497 - (35%) Gaps:117/497 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 ANRSDQDVYDY-------------KIKEDEFEGKGIPYNDWTLRLTVAIERSHCETFIAFQEQIP 109
            ||.|...:.||             .::|.|:.|.......:|..||....:...|.|...::|..
  Rat   255 ANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRI 319

  Fly   110 EFARYFYHASIYS-----------IWRSLRNRFMFVYTKEFEDKKDSYLSGYIFQDQPNILVITS 163
            |.:|........:           |.|:|:.       .:.|.     |||.|..||      ..
  Rat   320 EISRRGNAGDCLANPAVPWGQGVEIERALKQ-------VQVEG-----LSGNIKFDQ------NG 366

  Fly   164 QYLN--SSTFEIKTNRFVGPRNFNKNPEPVEFYILQRFDAKGTKATWETQSAMSSKMRNLKGREV 226
            :.:|  .:..|:|||   |||......|..:..:..            |:....:....|:.:.|
  Rat   367 KRINYTINIMELKTN---GPRKIGYWSEVDKMVVTL------------TELPSGNDTSGLENKTV 416

  Fly   227 VIGIFDYKPFMLLDYEKPPL----YYDRFMNTTDVTID-----GTDIQLMLIFCELYNCTIQVDT 282
            |:......|::::......|    .|:.:  ..|:..:     |...:|.::....|... ..||
  Rat   417 VVTTILESPYVMMKKNHEMLEGNERYEGY--CVDLAAEIAKHCGFKYKLTIVGDGKYGAR-DADT 478

  Fly   283 SEPYDWGDIYLNASGYGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR- 346
            .   .|.         |:||.::..:.|..:..:.:.....|.:|.:......|::.::..|.: 
  Rat   479 K---IWN---------GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKS 531

  Fly   347 ---LISWTLLLRPFQFVLWMCVMLCLLLESLALGITRR-----WEHSSVAAG---NSWISSLRFG 400
               :.|:   |.|..:.:|||::...:..|:.|.:..|     |.......|   .|..|:..||
  Rat   532 KPGVFSF---LDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFG 593

  Fly   401 CIS----TLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILT----LPTLEEAA 457
            ..:    :|..|:.|..:....|.:.|.|....:...:|:.:.|:..|||.||    :..:|.|.
  Rat   594 IFNSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAE 658

  Fly   458 D-SRQRLFDHKLIWTGTSQAW-----ITTIDE-----RSADP 488
            | |:|....:..:.:|:::.:     |...|:     |||:|
  Rat   659 DLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEP 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Gria2NP_058957.1 PBP1_iGluR_AMPA_GluR2 28..398 CDD:380612 35/163 (21%)
PBP2_iGluR_AMPA 413..794 CDD:270433 60/306 (20%)
Required for interaction with IQSEC1. /evidence=ECO:0000269|PubMed:20547133 867..877
Blue background indicates that the domain is not in the aligned region.

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