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Protein Alignment Ir76a and Gria2

DIOPT Version :9

Sequence 1:	NP_001097647.3	Gene:	Ir76a / 40157	FlyBaseID:	FBgn0260874	Length:	646	Species:	Drosophila melanogaster
Sequence 2:	NP_001077280.1	Gene:	Gria2 / 29627	RGDID:	61862	Length:	883	Species:	Rattus norvegicus

Alignment Length:	497	Identity:	97/497 - (19%)
Similarity:	178/497 - (35%)	Gaps:	117/497 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    58 ANRSDQDVYDY-------------KIKEDEFEGKGIPYNDWTLRLTVAIERSHCETFIAFQEQIP 109
            ||.|...:.||             .::|.|:.|.......:|..||....:...|.|...::|..
  Rat   255 ANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRI 319

  Fly   110 EFARYFYHASIYS-----------IWRSLRNRFMFVYTKEFEDKKDSYLSGYIFQDQPNILVITS 163
            |.:|........:           |.|:|:.       .:.|.     |||.|..||      ..
  Rat   320 EISRRGNAGDCLANPAVPWGQGVEIERALKQ-------VQVEG-----LSGNIKFDQ------NG 366

  Fly   164 QYLN--SSTFEIKTNRFVGPRNFNKNPEPVEFYILQRFDAKGTKATWETQSAMSSKMRNLKGREV 226
            :.:|  .:..|:|||   |||......|..:..:..            |:....:....|:.:.|
  Rat   367 KRINYTINIMELKTN---GPRKIGYWSEVDKMVVTL------------TELPSGNDTSGLENKTV 416

  Fly   227 VIGIFDYKPFMLLDYEKPPL----YYDRFMNTTDVTID-----GTDIQLMLIFCELYNCTIQVDT 282
            |:......|::::......|    .|:.:  ..|:..:     |...:|.::....|... ..||
  Rat   417 VVTTILESPYVMMKKNHEMLEGNERYEGY--CVDLAAEIAKHCGFKYKLTIVGDGKYGAR-DADT 478

  Fly   283 SEPYDWGDIYLNASGYGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR- 346
            .   .|.         |:||.::..:.|..:..:.:.....|.:|.:......|::.::..|.:
  Rat   479 K---IWN---------GMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKS 531

  Fly   347 ---LISWTLLLRPFQFVLWMCVMLCLLLESLALGITRR-----WEHSSVAAG---NSWISSLRFG 400
               :.|:   |.|..:.:|||::...:..|:.|.:..|     |.......|   .|..|:..||
  Rat   532 KPGVFSF---LDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFG 593

  Fly   401 CIS----TLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILT----LPTLEEAA 457
            ..:    :|..|:.|..:....|.:.|.|....:...:|:.:.|:..|||.||    :..:|.|.
  Rat   594 IFNSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAE 658

  Fly   458 D-SRQRLFDHKLIWTGTSQAW-----ITTIDE-----RSADP 488
            | |:|....:..:.:|:::.:     |...|:     |||:|
  Rat   659 DLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEP 700

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.