DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and GRIA1

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:257 Identity:54/257 - (21%)
Similarity:96/257 - (37%) Gaps:51/257 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 GLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR----LISWTLLLRPFQF 359
            |:||.::..|.|..|..:.:.....|.:|.:......|::.::..|.:    :.|:   |.|..:
Human   486 GMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSF---LDPLAY 547

  Fly   360 VLWMCVMLCLLLESLALGITRR-----WEHSSVAAGNSWIS---SLRFGCIS----TLKLFVNQS 412
            .:|||::...:..|:.|.:..|     |.......|....:   |..||..:    :|..|:.|.
Human   548 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQG 612

  Fly   413 TNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGTSQAW 477
            .:....|.:.|.|....:...:|:.:.|:..|||.||:..:....:|.:.|.....|..||.:|.
Human   613 CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAG 677

  Fly   478 IT---------TIDE------RSADPVLLGLMEHYRVYDANLISAFSHTEQMGFVVERLQFG 524
            .|         .:.|      :||:|                 |.|..|.:.|.:..|...|
Human   678 STKEFFRRSKIAVFEKMWTYMKSAEP-----------------SVFVRTTEEGMIRVRKSKG 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..402 CDD:380613
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 54/257 (21%)
Blue background indicates that the domain is not in the aligned region.

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