DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Grin3a

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_001263284.1 Gene:Grin3a / 242443 MGIID:1933206 Length:1135 Species:Mus musculus


Alignment Length:602 Identity:111/602 - (18%)
Similarity:211/602 - (35%) Gaps:207/602 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 SQYLNSSTF-------EIKTNRFVGPRNFNKNPEPVEFYILQ-RFDAKGTKATWETQSAMSSKMR 219
            |::|.::||       ::|.:..|...|        .|:|.. ::|..| |..|       :::.
Mouse   434 SRFLANTTFRGLSGSIKVKGSTIVSSEN--------NFFIWNLQYDPMG-KPMW-------TRLG 482

  Fly   220 NLKGREVVI--GIF-----------------DYKPFMLLDYEKPPLYYDRFMN------------ 253
            :.:|..:|:  ||:                 ..:...|:::   |..:.|.::            
Mouse   483 SWQGGRIVMDSGIWPEQAQRHKTHFHHPNKLHLRVVTLIEH---PFVFTREVDDEGLCPAGQLCL 544

  Fly   254 ---TTDVTIDGTDIQLMLIFCELY--NCTIQ-----------VDTSEP------YDWGDIYL--- 293
               |.|.:|      |..:|..|:  |.|:.           :|..|.      :|: |:|:   
Mouse   545 DPMTNDSSI------LDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDF-DLYIVGD 602

  Fly   294 -------NASGYGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLV-----PAPNR 346
                   |....||||.:|....:..|....:.....:.:|.|.....:.:..||     .||..
Mouse   603 GKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIG 667

  Fly   347 LISWTLLLRPFQFVLWMCVMLCLLLESLAL---------GITRRWEH-SSVAAGNSWIS---SLR 398
            ...|     |..:.:|:.:.:.|.:.::.|         |:|.:..: :.|.:.:|.::   :|.
Mouse   668 AFMW-----PLHWTMWLGIFVALHITAIFLTLYEWKSPFGMTPKGRNRNKVFSFSSALNVCYALL 727

  Fly   399 FGCISTLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRL 463
            ||..:.:|.....:..::.:.:|:..:...|         .|:..|||::   ..|:..:....:
Mouse   728 FGRTAAIKPPKCWTGRFLMNLWAIFCMFCLS---------TYTANLAAVM---VGEKIYEELSGI 780

  Fly   464 FDHKLIWTGTSQAW-ITTIDERSAD-------PVLLGLMEHYRV-----------YDANLISAFS 509
            .|.||  ...||.: ..|:.|.||:       |.:...|..|.|           .|...:.|| 
Mouse   781 HDPKL--HHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAF- 842

  Fly   510 HTEQMGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVA----------FVPRLWPHLN 564
                                  |.:.||...::.:|......||.          .:|...|..:
Mouse   843 ----------------------IMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTS 885

  Fly   565 AYNDFILAWHSSGF-----DKFWEWKIAAEYMNAHRQNRIVASEKTNLDI-GPVKLGIDNFIGLI 623
            ..::.|..:.|.||     ||::               ::|...|.:..: ..:::||.:|.||.
Mouse   886 NISELISQYKSHGFMDVLHDKWY---------------KVVPCGKRSFAVTETLQMGIKHFSGLF 935

  Fly   624 LLWCFGMICSLLTFLGE 640
            :|.|.|...|:||.:||
Mouse   936 VLLCIGFGLSILTTIGE 952

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Grin3aNP_001263284.1 PBP1_iGluR_NMDA_NR3 30..497 CDD:107372 17/78 (22%)
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 79/447 (18%)
Lig_chan 676..942 CDD:278489 57/317 (18%)
PPP2CB binding site. /evidence=ECO:0000250|UniProtKB:Q9R1M7 951..987 2/2 (100%)
GIT1-binding. /evidence=ECO:0000250|UniProtKB:Q9R1M7 1082..1115
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846519
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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