DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and gria2b

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_068069253.1 Gene:gria2b / 170451 ZFINID:ZDB-GENE-020125-4 Length:944 Species:Danio rerio


Alignment Length:428 Identity:79/428 - (18%)
Similarity:143/428 - (33%) Gaps:115/428 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 WRSLRNRFMFVYTKEF--EDKKDSYLSGYIFQDQPNILVITSQYLNSSTFEIKTNRFVGPRNFNK 186
            |.:|..       ||:  .|.|..|.|...: |...::....:||:....:|.       |..|.
Zfish   276 WEALEE-------KEYPGADSKIRYTSALTY-DAVQVMTEAFRYLHKQRIDIS-------RRANN 325

  Fly   187 -----NPE-------PVEFYILQ----------RFDAKGTKATWETQSAMSSKMR---------- 219
                 ||.       .:|..:.|          :||..|.:..: |.:.|..|..          
Zfish   326 GDCLANPAVPWAQGVEIERALKQVRVDGLTGNIQFDQYGKRVNY-TVNVMELKSNGAVKIGYWNE 389

  Fly   220 -----------------NLKGREVVIGIFDYKPFMLLDYEKPPLYYDRFMNT-------TDVTID 260
                             .|:.:.|::......|:::|....     |.||:.       .|:..:
Zfish   390 VDKMVVTKSDLFPNDTMGLENKTVIVTTILEAPYVMLKKNA-----DLFMDNERYEGYCVDLAAE 449

  Fly   261 -----GTDIQLMLIFCELYNCTIQVDTSEPYDWGDIYLNASGYGLVGMILDRRNDYGVGGMYLWY 320
                 |...||.::....|...    .:|...|.         |:||.::..:.|..|..:.:..
Zfish   450 IAKHCGFKYQLKIVGDGKYGAR----DAETKIWN---------GMVGELVYGKADIAVAPLTITL 501

  Fly   321 EAYEYMDMTHFLGRSGVTCLVPAPNR----LISWTLLLRPFQFVLWMCVMLCLLLESLALGITRR 381
            ...|.:|.:......|::.::..|.:    :.|:   |.|..:.:|||::...:..|:.|.:..|
Zfish   502 VREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSF---LDPLAYEIWMCIVFAYIGVSVVLFLVSR 563

  Fly   382 -----WEHSSVAAGNSWI--SSLRFGCIS----TLKLFVNQSTNYVTSSYALRTVLVASYMIDII 435
                 |.......|....  |:..||..:    :|..|:.|..:....|.:.|.|....:...:|
Zfish   564 FSPYEWHTEEYEDGQIQTNESTNEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGGVWWFFTLI 628

  Fly   436 LTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGT 473
            :.:.|:..|||.||:..:....:|.:.|.....|..||
Zfish   629 IISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGT 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
gria2bXP_068069253.1 PBP1_iGluR_AMPA_GluR2 27..397 CDD:380612 24/136 (18%)
PBP2_iGluR_AMPA 410..790 CDD:270433 54/278 (19%)

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