DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and gria2a

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_005170953.1 Gene:gria2a / 170450 ZFINID:ZDB-GENE-020125-3 Length:893 Species:Danio rerio


Alignment Length:652 Identity:128/652 - (19%)
Similarity:217/652 - (33%) Gaps:147/652 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 PLIIMDWHRWANRSDQDVYDYKIKEDEFEGKGIPYNDWTLRLTVAIERSHCETFIAFQEQIPEFA 112
            ||:.....||               :..|.|..|..|..:|.|.|:      |:.|.|.....|.
Zfish   263 PLVAKFDQRW---------------EALEEKEYPGADSRIRYTSAL------TYDAVQVMTEAFR 306

  Fly   113 RYFYHASIYSIWRSLRNRFMFV-----------YTKEFEDKKDSYLSGYIFQDQPNILVITSQYL 166
              |.|.....|.|...|.....           ..:..:..:...|:|.|..||           
Zfish   307 --FLHKQRIDISRRGNNGDCLANPAVPWAQGVEIERALKQVRVDGLTGNIQFDQ----------- 358

  Fly   167 NSSTFEIKTNRFVGPRNFNKNPEPVEFYILQRFDAKG-TKATWETQSAMSSKMRNLKGREVVIGI 230
                :..:.|..|..... ||..||:.......|... ||:.......|     .::.:.|::..
Zfish   359 ----YGRRVNYTVNVMEL-KNSGPVKIGYWNEMDKMAVTKSDLFPNDTM-----GMENKTVIVTT 413

  Fly   231 FDYKPFMLL--------DYEKPPLYYDRFMNTTDVTID-----GTDIQLMLIFCELYNCTIQVDT 282
            ....|:::|        |.|:    |:.:  ..|:..:     |...||.::....|...    .
Zfish   414 ILEAPYVMLKKNAELFTDNER----YEGY--CVDLAAEIAKHCGFKYQLRIVADGKYGAR----D 468

  Fly   283 SEPYDWGDIYLNASGYGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR- 346
            :|...|.         |:||.::..:.|..|..:.:.....|.:|.:......|::.::..|.: 
Zfish   469 AETKIWN---------GMVGELVYGKADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKS 524

  Fly   347 ---LISWTLLLRPFQFVLWMCVMLCLLLESLALGITRR-----W---EHSSVAAGNSWISSLRFG 400
               :.|:   |.|..:.:|||::...:..|:.|.:..|     |   |......|.| .|:..||
Zfish   525 KPGVFSF---LDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGQLGPS-ESTNEFG 585

  Fly   401 CIS----TLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQ 461
            ..:    :|..|:.|..:....|.:.|.|....:...:|:.:.|:..|||.||:..:....:|.:
Zfish   586 IFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAE 650

  Fly   462 RLFDHKLIWTGTSQAWITTIDERSADPVLLGLMEHY------RVYDANLISAFSHTE----QMGF 516
            .|.....|..||..|..|....|.:...|...|..|      .|:..|.:.......    :..:
Zfish   651 DLAKQTEIAYGTLDAGSTKEFFRRSKIALFDKMWQYMKSAEPSVFVKNTVEGVLRVRKSKGKYAY 715

  Fly   517 VVERLQFGHLGNTELIEN----DALKRLKLMVDDIYFAFTVAFVPRLWPHLNAYNDFILAWHSSG 577
            ::|...      .|.||.    |.:|....:....|...|    |:.....||.|..:|..:..|
Zfish   716 LLESTM------NEYIEQRKPCDTMKVGGNLDSKGYGIAT----PKGSALRNAVNLAVLKLNEQG 770

  Fly   578 -FDKF---WEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGIDNFIGLILLWCFGMICSLLTFL 638
             .||.   | |....|..:...:::    |||:      .|.:.|..|:..:...|:..::|..|
Zfish   771 LLDKLKNKW-WYDKGECGSGGGESK----EKTS------ALSLSNVAGVFYILVGGLGLAMLVAL 824

  Fly   639 GE 640
            .|
Zfish   825 VE 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
gria2aXP_005170953.1 Periplasmic_Binding_Protein_Type_1 23..391 CDD:299141 32/166 (19%)
ANF_receptor 51..373 CDD:279440 27/148 (18%)
PBP2_iGluR_AMPA 406..783 CDD:270433 82/410 (20%)
Lig_chan 538..816 CDD:278489 64/299 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591736
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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