DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Grin2d

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_036008580.1 Gene:Grin2d / 14814 MGIID:95823 Length:1345 Species:Mus musculus


Alignment Length:573 Identity:113/573 - (19%)
Similarity:181/573 - (31%) Gaps:216/573 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 TWETQSAMSSKMRNLK-------GR---------EVVIGIFDYKPFMLLDYEKPPLYYDRFMNTT 255
            |||...:...:...||       ||         .:.:...:.:||::::...|           
Mouse   399 TWEVVGSWEQQTLRLKYPLWSRYGRFLQPVDDTQHLTVATLEERPFVIVEPADP----------- 452

  Fly   256 DVTIDGTDIQLMLIFCELYNCTIQVD--------TSEPYDWG----------------------- 289
               |.||.|:      :...|..|::        .|.|.|..                       
Mouse   453 ---ISGTCIR------DSVPCRSQLNRTHSLVAPRSPPPDAPRPEKRCCKGFCIDILKRLAHTIG 508

  Fly   290 ---DIYLNASG----------YGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLV 341
               |:||..:|          .|::|.:..:|.|..:|.:.:..|..|.:|.:.....:|::.:|
Mouse   509 FSYDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISVMV 573

  Fly   342 PAPNRLISWTLLL-----------RPFQFVLW-MCVMLCLLL-----------------ESLALG 377
            ...|..:|.:..|           .|:...:| |..::||.:                 .|||.|
Mouse   574 ARSNGTVSPSAFLAFAWLMPPMSPEPYSPAVWVMMFVMCLTVVAVTVFIFEYLSPVGYNRSLATG 638

  Fly   378 ITRRWEHSSVAAGNS-WISSLRFGCISTLKLFVNQSTNYV----TSSYALRTVLVASYMIDIILT 437
              :|...|:...|.| |:         ...|..|.|....    |:|..:  |||.::...|.|.
Mouse   639 --KRPGGSTFTIGKSIWL---------LWALVFNNSVPVENPRGTTSKIM--VLVWAFFAVIFLA 690

  Fly   438 TVYSGGLAAILTLPTLEEAADSRQRLFDHKL---------IWTGTSQAWITTIDERSADPVLLGL 493
            : |:..|||.:   ..||..|:...|.|.|.         :..||.....|..:.||..|.:...
Mouse   691 S-YTANLAAFM---IQEEYVDTVSGLSDRKFQRPQEQYPPLKFGTVPNGSTEKNIRSNYPDMHSY 751

  Fly   494 MEHYR-------------------VYDANLISAFSHTEQ--------MGFVVERLQFG---HLGN 528
            |..|.                   :|||.:::..:..::        .|.|.....:|   |.|:
Mouse   752 MVRYNQPRVEEALTQLKAGKLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGS 816

  Fly   529 TELIENDALKRLKLMVDDIYFAFTVAFVPRLWPHLNAYNDFILAWHSSGFDKFWEWKIAAEYMNA 593
            ......| |..|:.:.||     .:..:.|||.....:||.|                  |.|::
Mouse   817 RWKRPID-LALLQFLGDD-----EIEMLERLWLSGICHNDKI------------------EVMSS 857

  Fly   594 HRQNRIVASEKTNLDIGPVKLGIDNFIGLILLWCFGMICSLLTFLGE---LWR 643
                               ||.|||..|:..:....|..|||.|..|   .||
Mouse   858 -------------------KLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWR 891

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Grin2dXP_036008580.1 Periplasmic_Binding_Protein_type1 <156..415 CDD:415822 4/15 (27%)
PBP2_iGluR_NMDA_Nr2 432..849 CDD:270436 87/459 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846592
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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