DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Grin2b

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_001350679.1 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:647 Identity:123/647 - (19%)
Similarity:234/647 - (36%) Gaps:173/647 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 IPYNDW------TLRLTVAIERSHCETFIAFQEQIPEFARYFYHASIYSIWRS-LRNRFMFVYTK 137
            :.|::|      .:|..:||..:.....::....|||.....|:.....|::| :.||::...| 
Mouse   280 VSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVT- 343

  Fly   138 EFEDKKDSYL-SGYIFQDQPNILVITSQYLNSSTFEIKTNRFVGPRNFNKNPEPVEFYILQRFDA 201
             ||.:..|:. .||  |..|.:::|   .||.   |.|..| ||  .:......:::|:..|   
Mouse   344 -FEGRNLSFSEDGY--QMHPKLVII---LLNK---ERKWER-VG--KWKDKSLQMKYYVWPR--- 393

  Fly   202 KGTKATWETQSAMSSKMRNLKGREVVIGIFDYKPFMLLDYEKPPLYYDRFMNTTD-----VTIDG 261
                        |..:....:...:.|...:..||:::: ...||......||..     ::.:.
Mouse   394 ------------MCPETEEQEDDHLSIVTLEEAPFVIVE-SVDPLSGTCMRNTVPCQKRIISENK 445

  Fly   262 TDIQLMLI------FCELYNCTIQVDTSEPYDWGDIYL----------NASGYGLVGMILDRRND 310
            ||.:...|      ||  .:...::..|..:.: |:||          |.:..|::|.::.:|..
Mouse   446 TDEEPGYIKKCCKGFC--IDILKKISKSVKFTY-DLYLVTNGKHGKKINGTWNGMIGEVVMKRAY 507

  Fly   311 YGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLWMCVMLCLLLESLA 375
            ..||.:.:..|..|.:|.:.....:|::.:|...|..:|.:..|.||...:|:.:.:.||:.|..
Mouse   508 MAVGSLTINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAV 572

  Fly   376 ----------LGITRRWEHSSVAAGNS-------WISSLRFGCISTLKLFVNQSTNYVTSSYALR 423
                      :|..|.........|.|       |   |.:|      |..|.|...........
Mouse   573 AVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIW---LLWG------LVFNNSVPVQNPKGTTS 628

  Fly   424 TVLVASY-MIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKL--------------IWTGT 473
            .::|:.: ...:|....|:..|||.:   ..||..|....|.|.|.              :..|:
Mouse   629 KIMVSVWAFFAVIFLASYTANLAAFM---IQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGS 690

  Fly   474 SQ-----------AWITTIDERSADPVLL----GLMEHYRVYDANLISAFSHTEQ--------MG 515
            ::           |::...::|..|..||    |.::.: :|||.:::..:..::        .|
Mouse   691 TERNIRNNYAEMHAYMGKFNQRGVDDALLSLKTGKLDAF-IYDAAVLNYMAGRDEGCKLVTIGSG 754

  Fly   516 FVVERLQFGHLGNTELIENDA--LKRLKLMVDDIYFAFTVAFVPRLWPHLNAYNDFILAWHSSGF 578
            .|     |...|....|:.|:  .:::.|.:..::....:..:..||.....:|:          
Mouse   755 KV-----FASTGYGIAIQKDSGWKRQVDLAILQLFGDGEMEELEALWLTGICHNE---------- 804

  Fly   579 DKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGIDNFIGLILLWCFGMICSLLTFLGE 640
                             :|.:::|:          |.|||..|:..:....|..||:||:.|
Mouse   805 -----------------KNEVMSSQ----------LDIDNMAGVFYMLGAAMALSLITFICE 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Grin2bNP_001350679.1 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601 29/120 (24%)
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 77/421 (18%)
NMDAR2_C 840..1482 CDD:402274 123/647 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846449
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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