DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Grik3

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_001074566.1 Gene:Grik3 / 14807 MGIID:95816 Length:919 Species:Mus musculus


Alignment Length:488 Identity:91/488 - (18%)
Similarity:170/488 - (34%) Gaps:142/488 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 NLKGREVVIGIFDYKPFMLLDYEKPPLY-YDRFMNTTDVTIDGTDIQLMLIFCELYNCTIQVDTS 283
            :|..|.:::.....:||::.......|| .|||        :|..|.|:.....:...:.::...
Mouse   430 SLTNRSLIVTTVLEEPFVMFRKSDRTLYGNDRF--------EGYCIDLLKELAHILGFSYEIRLV 486

  Fly   284 EPYDWGDIYLNASGYGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPN--- 345
            |...:|.........|:|..::|.:.|..|..:.:.:...:.:|.:......||:.|...||   
Mouse   487 EDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTN 551

  Fly   346 -RLISWTLLLRPFQFVLWMCVMLCLLLESLALGITRRWE-------H-----SSVAAGN-SWISS 396
             .:.|:   |.|....:||.|:|..|..|..|.:..|:.       |     |.|...| :.::|
Mouse   552 PSVFSF---LNPLSPDIWMYVLLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSEVVENNFTLLNS 613

  Fly   397 LRFGCISTLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADS-- 459
            ..||..|.::    |.:..:..:.:.|.:....:...:|:.:.|:..|||.||:..:|...||  
Mouse   614 FWFGMGSLMQ----QGSELMPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSAD 674

  Fly   460 ---RQRLFDHKLIWTGTSQAW-----ITTIDER-----------------------SADPVLL-- 491
               :|...::..:..|.:..:     |:|.::.                       :||..||  
Mouse   675 DLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFMSSKPSALVKNNEEGIQRTLTADYALLME 739

  Fly   492 -GLMEHYRVYDANLISAFSHTEQMGFVVERLQFG---HLGN----------TELIENDALKRLKL 542
             ..:|:....:.||       .|:|.:::...:|   .:|:          .:|.|.|.|..:| 
Mouse   740 STTIEYITQRNCNL-------TQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMK- 796

  Fly   543 MVDDIYFAFTVAFVPRLWPHLNAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNL 607
                           ..|            |..||                       ..|:.|.
Mouse   797 ---------------EKW------------WRGSG-----------------------CPEEENK 811

  Fly   608 DIGPVKLGIDNFIGLILLWCFGMICSLLTFLGE 640
            :..  .|||....|:.::...|::.|:|..:||
Mouse   812 EAS--ALGIQKIGGIFIVLAAGLVLSVLVAVGE 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Grik3NP_001074566.1 PBP1_iGluR_Kainate 37..417 CDD:380605
PBP2_iGluR_Kainate_GluR7 433..801 CDD:270441 76/417 (18%)
Blue background indicates that the domain is not in the aligned region.

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