DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Grik2

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_011241422.1 Gene:Grik2 / 14806 MGIID:95815 Length:943 Species:Mus musculus


Alignment Length:533 Identity:99/533 - (18%)
Similarity:179/533 - (33%) Gaps:159/533 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 TWETQSAM----SSKMR------NLKGREVVIGIFDYKPFMLLDYEKPPLY-YDRFMNTTDVTID 260
            ||:..|.:    |.|.:      :|..|.:::.....:|::|......||| .|||        :
Mouse   404 TWDPSSGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRF--------E 460

  Fly   261 GTDIQLMLIFCELYNCTIQVDTSEPYDWG---DIYLNASGYGLVGMILDRRNDYGVGGMYLWYEA 322
            |..|.|:.....:...|.::...|...:|   |:  |....|:|..::|.:.|..|..:.:.|..
Mouse   461 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDV--NGQWNGMVRELIDHKADLAVAPLAITYVR 523

  Fly   323 YEYMDMTHFLGRSGVTCLVPAPN----RLISWTLLLRPFQFVLWMCVMLCLLLESLALGITRRWE 383
            .:.:|.:......|::.|...||    .:.|:   |.|....:||.::|..|..|..|.:..|  
Mouse   524 EKVIDFSKPFMTLGISILYRKPNGTNPGVFSF---LNPLSPDIWMYILLAYLGVSCVLFVIAR-- 583

  Fly   384 HSSVAAGNSWIS---------SLRFGCISTLKLFV----------------NQSTNYVTSSY--- 420
                .:..||..         |.|..|...|:.::                |..::.|.:::   
Mouse   584 ----QSKFSWFKYPNCSHYHHSQRCLCTQHLESYMELCLFSPYEWYNPHPCNPDSDVVENNFTLL 644

  Fly   421 --------------------ALRTVLVAS--YMIDIILTTVYSGGLAAILTLPTLEEAADSRQRL 463
                                ||.|.:|..  :...:|:.:.|:..|||.||:..:|...||...|
Mouse   645 NSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDL 709

  Fly   464 FDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQMGFVVERLQFGHLGN 528
            .....|..|..:           |...:...:..::...:.:.||..:.:...:|:       .|
Mouse   710 AKQTKIEYGAVE-----------DGATMTFFKKSKISTYDKMWAFMSSRRQSVLVK-------SN 756

  Fly   529 TELIENDALKRLKLMVDDIYF---AFTVAFV-----------------------PRLWPHLNAYN 567
            .|.|:       :::..|..|   :.|:.||                       |...|:.:...
Mouse   757 EEGIQ-------RVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKIT 814

  Fly   568 DFILAWHSSG-----FDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGIDNFIGLILLWC 627
            ..||.....|     .:|:|            |.|.....|.....    .||:.|..|:.::..
Mouse   815 IAILQLQEEGKLHMMKEKWW------------RGNGCPEEESKEAS----ALGVQNIGGIFIVLA 863

  Fly   628 FGMICSLLTFLGE 640
            .|::.|:...:||
Mouse   864 AGLVLSVFVAVGE 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Grik2XP_011241422.1 PBP1_iGluR_Kainate 37..414 CDD:380605 3/9 (33%)
Periplasmic_Binding_Protein_Type_2 430..835 CDD:389745 82/460 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846627
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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