DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76a and Grid1

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:550 Identity:98/550 - (17%)
Similarity:185/550 - (33%) Gaps:168/550 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 RNFNKNPEPVEFYIL-----QRFDAKGTK-ATWETQSAMSSKMR------NLKGREVVIGIFDYK 234
            |..:.||. |:|.||     :.|.....| |||:::..::..::      .|:|..:.:.....:
Mouse   384 REDSSNPY-VQFEILGTTYSETFGKDMRKLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEE 447

  Fly   235 PFMLLDYE---KPPLYYDRFMNTTDVTIDGTDIQLMLIFCELYNCTIQVDTSEPYDWGDIYLNAS 296
            ||:::...   :|..|            .|..|.::....:......::..:....:|....|.|
Mouse   448 PFVMVAENILGQPKRY------------KGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNTS 500

  Fly   297 GYGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVL 361
            ..|::|.::.:|.|..:..:.:..|....:|.:.......|..|:..|...||...|..||.|.:
Mouse   501 WNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGILIKKPEEKISIFSLFAPFDFAV 565

  Fly   362 WMCVMLCLLLESLALGITRRWE------------------HSSVAAGNSWISSLRFGCISTLKLF 408
            |.|:...:.:..:.:.:..|.:                  ||::     ||.   :|.      |
Mouse   566 WACIAAAIPVVGVLIFVLNRIQAVRSQSATQPRPSASATLHSAI-----WIV---YGA------F 616

  Fly   409 VNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGT 473
            |.|......:|.|:|.|:.:.::..:|:.:.|:..|||.||:..::....:.|.|.....:..||
Mouse   617 VQQGGESSVNSVAMRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQDLSKQLEMSYGT 681

  Fly   474 ------------------------SQAWITTIDERSADPVLLGLMEHYR---------VYDANLI 505
                                    ::.|.|......||..:....|..|         ::|..::
Mouse   682 VRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSNPSEGIRKAKKGNYAFLWDVAVV 746

  Fly   506 SAFSHTE-------------QMGFVVERLQFG----HLGNTELIE------NDALKRLKLMVDDI 547
            ...:.|:             ..|:.: .||.|    .|.:..::|      .|.||:        
Mouse   747 EYAALTDDDCSVTVIGNSISSKGYGI-ALQHGSPYRDLFSQRILELQDTGDLDVLKQ-------- 802

  Fly   548 YFAFTVAFVPRLWPHLNAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPV 612
                      :.|||....:   |..|||                            |..:...:
Mouse   803 ----------KWWPHTGRCD---LTSHSS----------------------------TQTEGKSL 826

  Fly   613 KLGIDNFIGLILLWCFGMICSLLTFLGELW 642
            ||  .:|.|:..:...|::.:.|....|||
Mouse   827 KL--HSFAGVFCILAIGLLLACLVAALELW 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 13/52 (25%)
PBP1_iGluR_delta_1 25..423 CDD:107387 12/39 (31%)
PBP2_iGluR_delta_1 436..806 CDD:270448 68/414 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846304
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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