DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and GRIN3B

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:598 Identity:119/598 - (19%)
Similarity:215/598 - (35%) Gaps:204/598 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 SQYLNSSTFEIKTNRFVGP------------RNFNKNPEPVEFYILQRFDAKGTKATWETQSAMS 215
            :::|.:::|:.:|    ||            |:|       :.:.|:| |.:|..| |.|..:..
Human   339 ARFLANTSFQGRT----GPVWVTGSSQVHMSRHF-------KVWSLRR-DPRGAPA-WATVGSWR 390

  Fly   216 SKMRNL------------KGREV-----VIGIFDYKPFMLL-----DYEKP--PLYYDRFMNTTD 256
            ....:|            :|.:|     |:.:.:: ||:..     |.:.|  .|..|...|.: 
Human   391 DGQLDLEPGGASARPPPPQGAQVWPKLRVVTLLEH-PFVFARDPDEDGQCPAGQLCLDPGTNDS- 453

  Fly   257 VTIDGTDIQLMLIFCELYN--------------CTIQVDTSE------PYDWGDIYLNASG---- 297
            .|:|.       :|..|.|              |   :|..|      |:|: ::||...|    
Human   454 ATLDA-------LFAALANGSAPRALRKCCYGYC---IDLLERLAEDTPFDF-ELYLVGDGKYGA 507

  Fly   298 ------YGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRP 356
                  .||||.:|..|....|....:.....:.:|.|.....:.:..:|.|.:........:.|
Human   508 LRDGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRARDTASPIGAFMWP 572

  Fly   357 FQFVLWMCVMLCLLLESLAL---------GITRRWEHSSVAAGNSWISSLRFGCISTL-KLFVNQ 411
            ..:..|:.|...|.|.:|.|         |:|.|..:.|...  |:.|:|.. |.:.| :..|:.
Human   573 LHWSTWLGVFAALHLTALFLTVYEWRSPYGLTPRGRNRSTVF--SYSSALNL-CYAILFRRTVSS 634

  Fly   412 ST------NYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILT-LPTLEEAADSRQRLFDHKL- 468
            .|      ..:.:.:|:..:||.|         .|:..|||::. ..|.||.:.    :.|.|| 
Human   635 KTPKCPTGRLLMNLWAIFCLLVLS---------SYTANLAAVMVGDKTFEELSG----IHDPKLH 686

  Fly   469 ----------IWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQMGFVVERLQF 523
                      :|..:::|:|     :.:.|   .:..|.|.:.|       .|...|        
Human   687 HPAQGFRFGTVWESSAEAYI-----KKSFP---DMHAHMRRHSA-------PTTPRG-------- 728

  Fly   524 GHLGNTELIENDALKRLKLMVDDIYFAFTVAF---------------------VPRLWPHLNAYN 567
                 ..::.:|..|....::|.....:.|:.                     :|:..|..:..:
Human   729 -----VAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLS 788

  Fly   568 DFILAWHSSGF-----DKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGIDNFIGLILLWC 627
            :||..:.||||     ||:::.....:        |:.|..:|      :::.|.:|.||.:|.|
Human   789 EFISRYKSSGFIDLLHDKWYKMVPCGK--------RVFAVTET------LQMSIYHFAGLFVLLC 839

  Fly   628 FGMICSLLTFLGE 640
            .|:..:||:.|||
Human   840 LGLGSALLSSLGE 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 19..405 CDD:107372 15/78 (19%)
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 87/449 (19%)
Lig_chan 576..842 CDD:278489 63/323 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156190
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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