DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and Grik4

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_780690.2 Gene:Grik4 / 110637 MGIID:95817 Length:956 Species:Mus musculus


Alignment Length:612 Identity:114/612 - (18%)
Similarity:209/612 - (34%) Gaps:181/612 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 SIYSIWRSLR--NRFMFVYTKEFEDKKDSYLSGYIFQDQPNILVITSQYLNSSTFEIKTNRFVGP 181
            ::|::..:::  ||     ::|...|..|..|..|:|...:::    .||..    ::.....|.
Mouse   311 AVYAVVTAVQELNR-----SQEIGVKPLSCGSAQIWQHGTSLM----NYLRM----VELEGLTGH 362

  Fly   182 RNFNKNPEPVEFYI-LQRFDAKGTK--ATWETQSAMSSKMR--------NLKGREVVIGIFDYKP 235
            ..||...:...:.: :.:|...|.:  ..|.....:|...|        :|....:|:......|
Mouse   363 IEFNSKGQRSNYALKILQFTRNGFQQIGQWHVAEGLSMDSRLYASNISDSLFNTTLVVTTILENP 427

  Fly   236 FMLLDYEKPPLY-YDRFMNTTDVTIDGTDIQLMLIFCEL--YNCTIQVDTSEPYDWGDIYLNASG 297
            :::|......:. .||:        :|..:.::....|:  :|..|::.....|  |....|.:.
Mouse   428 YLMLKGNHQEMEGNDRY--------EGFCVDMLKELAEILRFNYKIRLVGDGVY--GVPEANGTW 482

  Fly   298 YGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPA-PNRLISWTLLLRPFQFVL 361
            .|:||.::.|:.|..|.|:.:..|..:.:|.:......|::.|... ..|...:...|.||...:
Mouse   483 TGMVGELIARKADLAVAGLTITAEREKVIDFSKPFMTLGISILYRVHMGRRPGYFSFLDPFSPGV 547

  Fly   362 WMCVMLCLLLESLALGITRR-----W--EH-----------SSVAAGNS-WISSLRFGCISTLKL 407
            |:.::|..|..|..|.:..|     |  .|           :..:.||| |.         .:..
Mouse   548 WLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWF---------PVGG 603

  Fly   408 FVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTG 472
            |:.|.:.....:.:.|.|....:...:|:.:.|:..|||.||:..:|...:|...|.|...|..|
Mouse   604 FMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQTAIEYG 668

  Fly   473 T------------------SQAW-----------ITTIDE------RSADPVLL--GLMEHYRVY 500
            |                  .:.|           :.:.:|      .|....||  .:.|:||..
Mouse   669 TIHGGSSMTFFQNSRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVLNSNYAFLLESTMNEYYRQR 733

  Fly   501 DANLISAFSHTEQMGFVVERLQFG-------------HLGNTELIENDALKRLKLMVDDIYFAFT 552
            :.||       .|:|.:::...:|             .|...:|.||:.|:.||           
Mouse   734 NCNL-------TQIGGLLDTKGYGIGMPVGSVFRDEFDLAILQLQENNRLEILK----------- 780

  Fly   553 VAFVPRLWPHLNAYNDFILAWHSSGFDKFWE-WKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGI 616
                 |.|                     || .|...|  ..||..               .||:
Mouse   781 -----RKW---------------------WEGGKCPKE--EDHRAK---------------GLGM 802

  Fly   617 DNFIGLILLWCFGMICSL-LTFLGELW 642
            :|..|:.::...|:|.:: :..|..||
Mouse   803 ENIGGIFVVLICGLIVAIFMAMLEFLW 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
Grik4NP_780690.2 Periplasmic_Binding_Protein_type1 24..402 CDD:385651 18/103 (17%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 79/432 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846216
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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