DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and grik4

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_031761990.1 Gene:grik4 / 100490768 XenbaseID:XB-GENE-1011875 Length:962 Species:Xenopus tropicalis


Alignment Length:421 Identity:82/421 - (19%)
Similarity:140/421 - (33%) Gaps:140/421 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 LNASGYGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPA-PNRLISWTLLLRP 356
            ||.:..|:||.::.|:.|..|.|:.:..|..:.:|.:......|::.|... ..|...:...|.|
 Frog   481 LNGTWTGMVGELISRKADLAVAGLTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDP 545

  Fly   357 FQFVLWMCVMLCLLLESLALGITRR-----W--EH-----------SSVAAGNS-WISSLRFGCI 402
            |...:|:.::|..|..|..|.:..|     |  .|           :..:.||| |.        
 Frog   546 FSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWF-------- 602

  Fly   403 STLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHK 467
             .:..|:.|.:.....:.:.|.|....:...:|:.:.|:..|||.||:..::...:|...|.|..
 Frog   603 -PVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMDVPIESVDDLADQT 666

  Fly   468 LIWTGT------------------SQAW-----------ITTIDE------RSADPVLL--GLME 495
            .|..||                  .:.|           :.:.:|      .|....||  .:.|
 Frog   667 TIEYGTIHGGSSMTFFQNSRYQTYQRMWNYMHSKQPSVFVKSTEEGIARVLNSNYAFLLESTMNE 731

  Fly   496 HYRVYDANLISAFSHTEQMGFVVERLQFG-------------HLGNTELIENDALKRLKLMVDDI 547
            :||..:.||       .|:|.:::...:|             .|...:|.||:.|:.||      
 Frog   732 YYRQRNCNL-------TQVGGLLDTKGYGIGMPVGSAFRDEFDLAILQLQENNCLEDLK------ 783

  Fly   548 YFAFTVAFVPRLWPHLNAYNDFILAWHSSGFDKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPV 612
                      |.|            |......|          ...||..               
 Frog   784 ----------RKW------------WDGGKCPK----------EEDHRAK--------------- 801

  Fly   613 KLGIDNFIGLILLWCFGMICSLLTFLGE-LW 642
            .||::|..|:.::...|:|.::|..:.| ||
 Frog   802 GLGMENIGGIFVVLICGLIVAILIAMLEFLW 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
grik4XP_031761990.1 Periplasmic_Binding_Protein_type1 23..400 CDD:471960
PBP2_iGluR_kainate_KA1 414..788 CDD:270442 68/350 (19%)
Blue background indicates that the domain is not in the aligned region.

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