DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and grik3

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_017206939.1 Gene:grik3 / 100334689 ZFINID:ZDB-GENE-211021-1 Length:991 Species:Danio rerio


Alignment Length:460 Identity:88/460 - (19%)
Similarity:174/460 - (37%) Gaps:85/460 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 NLKGREVVIGIFDYKPF-MLLDYEKPPLYYDRFMNTTDVTIDGTDIQLMLIFCELYNCTIQVDTS 283
            :|..|.:||.....:|: ||...:|..:..|||        :|..|.|:.....:...:.::...
Zfish   423 SLSNRSLVITTILEEPYVMLKKSDKALVGNDRF--------EGFCIDLLKELASILGFSYEIHLV 479

  Fly   284 EPYDWGDIYLNASGY--GLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR 346
            ....:|  :.:..|.  |::..:::.|.|..|..:.:.:...:.:|.:.....:|::.|...||.
Zfish   480 PDGKYG--FQDDKGQWNGMIRELMEHRADLAVAPLTITFMREKAIDFSKPFLNTGISILYRKPNS 542

  Fly   347 LIS-WTLLLRPFQFVLWMCVMLCLLLESLALGITRRWE-------H-----SSVAAGN-SWISSL 397
            ..| :...|.|....:|:.::|..|..|..|.:..|:.       |     |.|...| :.::|.
Zfish   543 TNSGFFSFLNPMTPDIWVYILLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSDVVENNFTLLNSF 607

  Fly   398 RFGCISTLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQR 462
            .||..|.::    |.:..:..:.:.|.:....:...:|:.:.|:..|||.||:..::...||...
Zfish   608 WFGVGSLMQ----QGSELMPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMDSPVDSADD 668

  Fly   463 LFDHKLIWTGTSQAWITTIDERSADPVLLGLMEHYRVYDANLISAFSHTEQMGFVVERLQFGHLG 527
            |.....|..|..:           |...:...:..||.....:.||..:.|....|:.::     
Zfish   669 LAKQTKIEYGVVK-----------DGATMSFFKKSRVSTFEKMWAFMSSRQSTSFVKSIE----- 717

  Fly   528 NTELIENDALKRL-----KLMVDDIYFAFTVAFVPRLWPHLNAYNDFILAWHSSGF------DKF 581
                   |.::|:     .|:::    :.|:.:|.|...:|......|   .|.|:      ...
Zfish   718 -------DGIQRVLKSDYALLME----STTIEYVTRRNCNLTQVGGII---DSKGYGIGTPKGSP 768

  Fly   582 WEWKIAAEYMNAHRQNRI-VASEK----------TNLDIGPVKLGIDNFIGLILLWCFGMICSLL 635
            :..||....:......|: :..||          ...:.||  :||.|..|:.::...|::.|:.
Zfish   769 YRDKITIAILGILEDGRLHMLKEKWWSGSSCLEDERYETGP--MGIQNLGGIFIVLASGLVLSVF 831

  Fly   636 TFLGE 640
            ..:||
Zfish   832 VAIGE 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
grik3XP_017206939.1 PBP1_iGluR_Kainate 32..410 CDD:380605
Periplasmic_Binding_Protein_Type_2 426..794 CDD:473866 77/411 (19%)
Blue background indicates that the domain is not in the aligned region.

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