DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76a and grin2cb

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:654 Identity:126/654 - (19%)
Similarity:225/654 - (34%) Gaps:198/654 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 LRLTVAIERSHCETFIAFQEQIPEFARYFYHASIYSIWRSLRNRFMFVYT-------KEFEDKKD 144
            :|..|||......:|...:..|||     .|:...|..:|..|..:|.:.       |:.....|
Zfish   298 VREGVAIIVKGVHSFHKHRGFIPE-----GHSDCSSPVKSYANNSLFRHMLNVSWEHKDLSFNSD 357

  Fly   145 SYLSGYIFQDQPNILVITSQYLNS----STFE--IKTNRF-VGPRNFNKNPEPVEFYILQRFDAK 202
            .||:      .|::::|.....|.    .::|  |...|: |.|| :....|||.          
Zfish   358 GYLT------NPSMVIIALDRENHWDKVGSYEGGILQMRYPVWPR-YGSFLEPVS---------- 405

  Fly   203 GTKATWETQSAMSSKMRNLKGREVVIGIFDYKPFMLLDYEKP--------PLYYDRFMNTTDVTI 259
                               ..|.:.:...:.:||::::...|        .:...|..|.|:..|
Zfish   406 -------------------DNRHLTVATLEERPFVIVESVDPATGTCVRNTVPCRRQSNRTESII 451

  Fly   260 DGTDIQLMLIFCELYNCTIQVDTSEPYDWG-DIYLNASG----------YGLVGMILDRRNDYGV 313
            ..|:....|. |:.:...|....|....:. |:||..:|          .|::|.:..:|.|..:
Zfish   452 GHTEPYTKLC-CKGFCIDILKKLSRTIKFSYDLYLVTNGKHGKMVRGVWNGMIGEVFYKRADMAI 515

  Fly   314 GGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNRLISWTLLLRPFQFVLW-MCVMLCLLLESLALG 377
            |.:.:..|..|.:|.:.....:|::.:|...|..:|.:..|.|:...:| |..::||.:.::.:.
Zfish   516 GSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVF 580

  Fly   378 ITRRWEH-SSVAAGNSWISS---------------LRFGCISTLKLFVNQSTNYVTSSYALRTVL 426
            :   :|: |.|....|.:|:               |.:|.:....:.:.....  |:|..:  ||
Zfish   581 V---FEYFSPVGYNRSLVSAKAPGGPTFTIGKSVWLLWGIVFNNSVPIENPKG--TTSKIM--VL 638

  Fly   427 VASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGTSQAWITTI----DERSAD 487
            |.::...|.|.: |:..|||.:                        ..:.:|.|:    |::...
Zfish   639 VWAFFAVIFLAS-YTANLAAFM------------------------IQEQYIDTVSGLSDKKFQK 678

  Fly   488 PVLLGLMEHYRVY----------DANLISAF--SHTEQMGFVVERLQFGHLGNTELIENDALKRL 540
            |     .|||..:          :.|:.|.:  .||..:.:           |.:.:| :||..|
Zfish   679 P-----QEHYPPFRFGTVPNGSTERNIRSNYPDMHTHMIKY-----------NQKGVE-EALNSL 726

  Fly   541 KLMVDD--IYFAFTVAFVPRLWPHLNAYND-------------FILAWHSSGFDKFWEWK----- 585
            |....|  ||.|..:.::        |..|             |....:.....|...||     
Zfish   727 KTGKLDAFIYDAAVLNYM--------AGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRPIDL 783

  Fly   586 IAAEYMNAHRQNR--------IVASEKTNLDIGPVKLGIDNFIGLILLWCFGMICSLLTFLGE-- 640
            ...:::......|        |..:||.  ::...||.|||..|:..:....|..|||.|..|  
Zfish   784 ALLQFLGDGDTQRLETVWLSGICQNEKN--EVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHL 846

  Fly   641 -LWR 643
             .|:
Zfish   847 LYWK 850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 24/108 (22%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 82/458 (18%)
NMDAR2_C 845..>932 CDD:313729 1/6 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591715
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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