DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and grin3bb

DIOPT Version :9

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:609 Identity:122/609 - (20%)
Similarity:214/609 - (35%) Gaps:182/609 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 DQPNILVITS------QYLNSSTFEIKTNRFVGPRNFNK--NPEPVEFYILQRFDAKG-----TK 205
            |:||...:.|      ::|::::|...|...:..||.::  ....|..:.|:| ||.|     |.
Zfish   348 DKPNKHELPSSGQYIARFLSNTSFVGLTGPVIVQRNLSRVHTSHKVHIWSLRR-DAVGQPTWVTV 411

  Fly   206 ATWE--------------------TQSAMSSKMRNLK-------GREVVIGIFDYKPFMLL---- 239
            .:||                    |:..|..:.|..:       .|..|:.:.:: ||:..    
Zfish   412 GSWEGGRLNVEEQGLWQGSSPRQRTEGQMGREGRRWRAGFPVSGSRLRVVTLVEH-PFVFTREVD 475

  Fly   240 -DYEKPPLYY--DRFMNTTDVTID--------GTDIQLMLIF---CELYNCTIQVDTSEPYDWG- 289
             |...|...|  |...|::: |:|        |....|...:   |..|...:....||..::. 
Zfish   476 EDGNCPAGQYCLDAGTNSSE-TLDHLYAERAQGNKSFLPPDYSKCCYGYCIDLLEKLSEDMNFEF 539

  Fly   290 DIYLNASG----------YGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLV--- 341
            |:|:...|          .||||.:|....|..|....:.....:.:|.|.....:.:..||   
Zfish   540 DLYIVGDGKYGAVKGGQWTGLVGDLLSGVADMAVTSFSINSARSKVIDFTSPFFSTSLGILVRSK 604

  Fly   342 --PAPNRLISWTLLLRPFQFVLWMCVMLCLLLESLAL---------GIT----RRWEHSSVAAGN 391
              .||.....|     |..:.:||.:.:.|.:.:|.|         |:|    .|.:..|.::..
Zfish   605 DTAAPIGAFMW-----PLHWSMWMGIFVALHITALFLTLYEWKSPFGMTPHGRNRVKVFSYSSAL 664

  Fly   392 SWISSLRFGCISTLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILT-LPTLEE 455
            :...::.||...:.|.....:..::.:.:|:..:||.|         .|:..|||::. ..|.||
Zfish   665 NLCYAILFGRTVSSKTPKCWTGRFLMNLWAIFCLLVLS---------SYTANLAAVMVGEKTFEE 720

  Fly   456 AADSRQRLFDHKLIWTGTSQAW-ITTIDERSADPVLL----GLMEHYRVY--------------D 501
            .:........|      .||.: ..|:.|.||:..:.    .:.|:.|.:              |
Zfish   721 VSGIHDAKLHH------PSQGFRFGTVRESSAEDYMKKSFPEMHEYMRKFNEPTTPDGVATLKTD 779

  Fly   502 ANLISAFSHTEQMGFVVERLQFGHLGNTELIENDALKRLKLMVDDIYFAFTVA----------FV 556
            ...:.||                       |.:.||...::.:|......||.          .:
Zfish   780 PPQLDAF-----------------------IMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGL 821

  Fly   557 PRLWPHLNAYNDFILAWHSSGF-----DKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGI 616
            |:..|..:..::|:..:.|.|:     ||   |     |.......|:.|..:|      :::||
Zfish   822 PQNSPLTSNISEFVSRYKSDGYMDMLHDK---W-----YKVVPCGKRVFAVTET------LQMGI 872

  Fly   617 DNFIGLILLWCFGMICSLLTFLGE 640
            .:|.||.:|.|.|:..:|||..||
Zfish   873 RHFSGLFVLLCVGVTGALLTLAGE 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372 18/80 (23%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 84/447 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591699
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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