DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76a and gria1

DIOPT Version :10

Sequence 1:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_004912781.1 Gene:gria1 / 100127569 XenbaseID:XB-GENE-995621 Length:903 Species:Xenopus tropicalis


Alignment Length:221 Identity:47/221 - (21%)
Similarity:88/221 - (39%) Gaps:34/221 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 GLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFLGRSGVTCLVPAPNR----LISWTLLLRPFQF 359
            |:||.::..|.|..|..:.:.....|.:|.:......|::.::..|.:    :.|:   |.|..:
 Frog   477 GMVGELVYGRADLAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSF---LDPLAY 538

  Fly   360 VLWMCVMLCLLLESLALGITRR-----WEHSSVAAGN---SWISSLRFGCIS----TLKLFVNQS 412
            .:|||::...:..|:.|.:..|     |.:.....|.   :...|..||..:    :|..|:.|.
 Frog   539 EIWMCIVFAYIGVSVVLFLVSRFSPYEWHNEEFEEGKEQPTTDQSNEFGIFNSLWFSLGAFMQQG 603

  Fly   413 TNYVTSSYALRTVLVASYMIDIILTTVYSGGLAAILTLPTLEEAADSRQRLFDHKLIWTGT---- 473
            .:....|.:.|.|....:...:|:.:.|:..|||.||:..:....:|...|.....|..||    
 Frog   604 CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESADDLAKQTEIAYGTLDSG 668

  Fly   474 ------SQAWITTIDE-----RSADP 488
                  .::.|...::     |||:|
 Frog   669 STKEFFKRSKIAVFEKMWTYMRSAEP 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76aNP_001097647.3 None
gria1XP_004912781.1 PBP1_iGluR_AMPA_GluR1 26..393 CDD:380613
PBP2_iGluR_AMPA_GluR1 407..788 CDD:270447 47/221 (21%)
Blue background indicates that the domain is not in the aligned region.

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