DRSC/TRiP Functional Genomics Resources

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Protein Alignment SREBP and sre1

DIOPT Version :9

Sequence 1:NP_001262064.1 Gene:SREBP / 40155 FlyBaseID:FBgn0261283 Length:1113 Species:Drosophila melanogaster
Sequence 2:NP_595694.1 Gene:sre1 / 2540730 PomBaseID:SPBC19C2.09 Length:900 Species:Schizosaccharomyces pombe


Alignment Length:1055 Identity:198/1055 - (18%)
Similarity:359/1055 - (34%) Gaps:386/1055 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 PP---NTAVYPPSLGSSFVYQSMS---------------PP---TSPVESANQNVNVMQPVAATP 191
            ||   ||::.|.|...|.:..|||               ||   ::.:.|.|...|...|:.:..
pombe    73 PPTLTNTSLSPHSFSLSDMESSMSNWLNPFAFDNTMNSAPPLFTSTNMGSPNSLENSTNPLLSNC 137

  Fly   192 APASA----------------------------------PLPQQSYPQPFITYNSKAGMTSDEAM 222
            ...::                                  |...|:||...:: |.:..:.::|  
pombe   138 GSPNSFQNETFTGPSLNEFDADDKIQRQMKILHSVDTIDPSTVQNYPSADMS-NPEVKLKTEE-- 199

  Fly   223 YFLLQP--TVASPTPS----------------PPVAP--PPTSTGSRASKVRVAPLAPSPAAMEV 267
              ::.|  |...|.||                |...|  .|.|.||         |:||.....|
pombe   200 --IITPMDTTCKPEPSAKKIKLSPSSEDSCSIPETLPFSAPKSRGS---------LSPSETPDFV 253

  Fly   268 QGKVPINRVQPKVKEVKRSAHNAIERRYRTSINDKINELKNLVVGEQA----------------- 315
            .|        |..|. |::|||.||:||||::||:|.||::.|...:|                 
pombe   254 AG--------PGGKP-KKTAHNMIEKRYRTNLNDRICELRDAVPSLRAAAALRCGNSLDDEDLGG 309

  Fly   316 -----KLNKSAVLRKSIDKIRDLQRQNHDLKAELQRLQRELMARDGSKVKDLLQLGTRPGRASKK 375
                 ||||..:|.|:.:.||.|:.:|    .|||:..::|..|                     
pombe   310 LTPARKLNKGTILAKATEYIRHLEAKN----KELQKTNKQLSDR--------------------- 349

  Fly   376 RRESSQTFTTDAGLTPPRSDESDPSLSPMHSDISLPPSPYGGSTASCSSGSSSSNEEPLVVPSSM 440
                 ..|..|..:.||.:|     ...::|...:..|.|....:|..:.:..:...|.:  ::|
pombe   350 -----LAFYEDPSMAPPSND-----TRAVNSVNVVSSSDYSVHQSSRPNLTQRAFTSPTL--NTM 402

  Fly   441 RGMATHSRLGLCMFMFAILAVNPFKTFLQRGHYDSNDDLGDMSGQRRILSYDVEGEGFAV--WQQ 503
            ...|.:..:||.:|                 :|..||....:.|.            ||:  :..
pombe   403 GRTALNGMVGLGLF-----------------NYFGNDSSQSVYGL------------FALPPFLM 438

  Fly   504 SSWIWLLNFTLM-LGCLVKLLVY------------GDPQLDAQTDAYCQHRQRADFYFSQGQSSQ 555
            |.:...:.|.:: :|.::..|.|            |:.:....|                 :||.
pombe   439 SPFTGTVLFNMLKIGVVLLGLFYLLHDNSLFKGFKGEKKSKVST-----------------RSSM 486

  Fly   556 AYAGYLNCLHMFGLSLPASRLECYLQTTWQFLRFLFH-----RLWLGRV----------LSRRSG 605
            :               |:|.|  :.:|.::....|.|     .|:.|.:          |:.|..
pombe   487 S---------------PSSIL--FRKTVFEKYCLLDHSTSTISLFFGLLIFTLKSAYGYLTHRLS 534

  Fly   606 GLFSNAAS---RKQALASARELALLFNRLNQLQLTGNGSRGDMNGIMMALFASNMAEVAHNLLTP 667
            .|::::.:   .:|.||..|.:    .:|...||.|..::.|...::| :|||:.:      |.|
pombe   535 ALYTSSENWVYSEQQLAEVRNM----EKLLDAQLMGGDAKVDRLRLLM-VFASSFS------LPP 588

  Fly   668 RETIC-IHVM--TALRMKRSAPKWLQQLFARYYMSRARQECGLTRATEQTQELRWAFTAYGYRYC 729
            ....| :..|  ..:....|.|..:......::.:.|:::...:....:.:||         ..|
pombe   589 SSHTCALQAMYCQLIFSNTSVPSAIVSKCVAFFWNAAKKQHSKSSVHAELREL---------PEC 644

  Fly   730 ATHVFTYDLSDSGEQDGFFTRLRNPCDPAAHVIKQYREHLLFKAIQCLVGAGHKSGGLPTSSVSG 794
                 |.:|.::...|..|         :.:::::     |:...:|...:...|..:.:|    
pombe   645 -----TANLIENSHADDVF---------SPNMVER-----LWVLAKCTRDSAQMSDSIISS---- 686

  Fly   795 EAEQLQQQQHSGTIVSNVLKYTSLLKDTLWADEDERDTNVVWW-ADVLETAVHWLLGEDTLAEQL 858
                          :|:||..:.|            :....|: ||:|:.    ||.| :|:.::
pombe   687 --------------LSDVLVLSPL------------EVLASWYAADLLDA----LLME-SLSRKV 720

  Fly   859 YGRIKQMPTQLQQCGENDHLPKALHAVLRAKMILL-KNNGNALDKSLKQLVNI--LCDESSVELQ 920
              .|.::...:..|.:|..:.:  ||:| ||::|. :|..::|::.|....|.  ||.:...:..
pombe   721 --EISEIEEIISLCPKNSSIIR--HALL-AKLVLFPENTADSLNEVLAAYKNTLDLCSQDKRKQS 780

  Fly   921 ECLTVNRITDAKGIKLLFQLLTCDWLLETRTALWELEHMNMEDDGFYQ---VPGEVLEKFQTDLN 982
            ..|.:|       :..||.|.:|..|...|....::...      .||   ||..     ..|:.
pombe   781 SVLKIN-------LSKLFTLHSCLSLALQRLGYGDVSKR------MYQEIFVPDS-----DADIT 827

  Fly   983 SLRNIV----------------ENIPNAQSRIYLYEAVCRLMAGASPCPTQQLLDRSLRSRNAHS 1031
            .|..|:                ||....:..:|:..|:          .|.::.|..|..:..:|
pombe   828 PLSFIISWTALNTFAPICTSPKENDVVEKMAMYVRTAI----------GTLKIQDLKLSRKLINS 882

  Fly  1032 SIFCGSKDRRQQNFV 1046
            .|..||:.:....:|
pombe   883 CIDIGSRLQEDLGYV 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SREBPNP_001262064.1 HLH 281..338 CDD:238036 27/78 (35%)
OmpH <289..>364 CDD:281871 29/96 (30%)
sre1NP_595694.1 HLH 261..333 CDD:278439 25/71 (35%)
DUF2014 517..766 CDD:286510 58/327 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2588
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001476
OrthoInspector 1 1.000 - - otm47246
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1708
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.930

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