DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trpml and mcoln2

DIOPT Version :9

Sequence 1:NP_649145.1 Gene:Trpml / 40152 FlyBaseID:FBgn0262516 Length:652 Species:Drosophila melanogaster
Sequence 2:XP_002931739.3 Gene:mcoln2 / 100379826 XenbaseID:XB-GENE-5767908 Length:555 Species:Xenopus tropicalis


Alignment Length:566 Identity:212/566 - (37%)
Similarity:328/566 - (57%) Gaps:71/566 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 QEERMRRKLQFFFMNPIEKWQAKRKFPYKFVVQIVKIFLVTMQLCLFAHSRYNHINYTGDNRFAF 155
            :|..::..|:|:||||.:|::|:.:.|:|.::|::||.:||.||.||..|....::|..::..||
 Frog    24 EENILKEDLKFYFMNPCDKYRARHQIPWKLLLQVLKIVMVTTQLVLFGLSNQLVVSYKEESTMAF 88

  Fly   156 SHLFLRGW------DSSREVESYPPAVGPFALYLKSEFFDTVQYAVNGYANVSR-SIGPYDYPTP 213
            .||||:|:      |.||.|            |.:.:.:|::.:|:..|..:.. |:|...|  .
 Frog    89 KHLFLKGYTGRDEDDCSRTV------------YTQKDVYDSIFFAIEQYRRLKEISLGTVAY--E 139

  Fly   214 NNTMPPLKLCLQNYREGTIFGFNESYIFDPHIDEVCERL---------PPNVTTIG-----VENY 264
            ......||:|.|:|.:.:|...|:::..||:::..|..|         |||::.|.     :|.|
 Frog   140 RGEKRGLKVCKQHYHQDSIHPSNDTFYIDPNVETECLHLQHEVLASKQPPNMSAINSTFFYLELY 204

  Fly   265 LRQRDVEVNFASLVSAQLTFKIKTVNFKANGGPLSAPDCFRFDISITFNNRDHDGQMLLSLDAEA 329
                       .|:..:::||:|.::.:.. .....|||:.|...|.|||:.|.|::.|..::||
 Frog   205 -----------RLIKVEISFKLKGIDLQTM-RVRELPDCYVFHNRIIFNNQAHSGKIKLFFESEA 257

  Fly   330 TRLKC-----HGATDFISDANFDSMLRSVLNIFVLLTCALSFALCTRALWRAYLLRCTTVNFFRS 389
            :...|     .|.|    ..|...:|  :.:.||:|||..|..||||::..|..|:...||||..
 Frog   258 SVQDCKDWHISGCT----QKNTHYIL--LFDGFVILTCLASLILCTRSIVLAIKLQKRFVNFFFE 316

  Fly   390 QFGKELSFDGRLEFVNFWYIMIIFNDVLLIIGSALKEQIEGRYLVVDQWDTCSLFLGIGNLLVWF 454
            ::.:.:....:|||:|.||:::|.:|::.|:||.:|.:|:.:.:.  .:|.|||.||...||||.
 Frog   317 RYKRHICSSDKLEFINGWYVLVIISDLMTIVGSIMKMEIKAKNMT--SYDVCSLLLGTSTLLVWV 379

  Fly   455 GVLRYLGFFKTYNVVILTLKKAAPKILRFLIAALLIYAGFVFCGWLILGPYHMKFRSLATTSECL 519
            ||:||||:|:.|||:|||::.:.||:|||...|.:||.|::||||::|||||.||..|.|.:|||
 Frog   380 GVIRYLGYFQKYNVLILTMQASLPKVLRFCCCAGMIYFGYIFCGWIVLGPYHEKFEDLNTVAECL 444

  Fly   520 FALINGDDMFATFATLSSKATWLWWFCQIYLYSFISLYIYVVLSLFIAVIMDAYDTIKAYYKDGF 584
            |:|:||||||||||.:..|:|.:|.|.::||||||||:||:||||||.:|.|:|:|||.|.::||
 Frog   445 FSLVNGDDMFATFAEIRRKSTLVWLFSRVYLYSFISLFIYMVLSLFIVLITDSYETIKKYQQNGF 509

  Fly   585 PTTDLKAFVGTRTAEDISSGVFMTDLDDFDQTSFLDVVKSICCCGR 630
            |:|||..|:....|....||    ...|       :.|..||||.|
 Frog   510 PSTDLHEFLRGNDAVAQHSG----KKPD-------NAVTLICCCRR 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpmlNP_649145.1 Ion_trans 403..578 CDD:278921 96/174 (55%)
mcoln2XP_002931739.3 ELD_TRPML 98..265 CDD:425394 46/192 (24%)
PKD_channel <377..501 CDD:400395 75/123 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 200 1.000 Domainoid score I2977
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 408 1.000 Inparanoid score I1835
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1379516at2759
OrthoFinder 1 1.000 - - FOG0001492
OrthoInspector 1 1.000 - - otm48635
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X949
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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