DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment serp and Cda4

DIOPT Version :9

Sequence 1:NP_001262062.1 Gene:serp / 40150 FlyBaseID:FBgn0260653 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_728468.1 Gene:Cda4 / 33144 FlyBaseID:FBgn0052499 Length:486 Species:Drosophila melanogaster


Alignment Length:518 Identity:171/518 - (33%)
Similarity:264/518 - (50%) Gaps:90/518 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KKEESFEKELCKDKDA-GEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPAGLYFDIEKQTCDWKES 101
            |::|.|:   |....| |.:     .:...||...||........|||:||:||..::.|.:|: 
  Fly    21 KEKEEFQ---CPSHIANGNY-----ADPATCRRFYQCVDGYPYLNRCPSGLFFDDVQKFCTFKD- 76

  Fly   102 VKNCKSKNKERRVKPLLHTDEPLCQDGFLACGDGNCIERGLFCNGEKDCSDGSDENTCDIDNDPN 166
                     |.:..||..|..|..:                        :.......|:.:|   
  Fly    77 ---------EAKCGPLPTTPAPATE------------------------APADTAQRCNTEN--- 105

  Fly   167 RAPPCDPAVCVLPDCFCSEDGTSIPGDLPAKDVPMMITITFDDAINNNNIELYKEIFK-DRKNPN 230
                     |.||.||||:|||.|||||..:.:|.:|.:|||.|:|.||.:.|::||. .|||||
  Fly   106 ---------CALPYCFCSKDGTQIPGDLEPEKIPQIIMLTFDGAVNLNNYQHYQKIFDGKRKNPN 161

  Fly   231 GCSIKATYFVSHKYTNYSAVQETARKGHEIAVHSITHNDEERFWSNATVDDWAKEMAGMRIITEK 295
            ||.|:.|:|:||:|:||..:|.....||||...||:   :::...:...::|..||.|||.|...
  Fly   162 GCLIRGTFFMSHEYSNYQQIQHLGYYGHEIGTESIS---QQQGLQDKGYEEWVGEMIGMREILRH 223

  Fly   296 FANITDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNL 360
            |||::.|.|||:|||:|:.|.|.|:.::|:..::|||:||.|....|:||||:.:::.|.|... 
  Fly   224 FANVSVNDVVGMRAPFLKPGRNTQYKVLEDFGYIYDSSITVPPVPVPVWPYTLDYKISHECKSG- 287

  Fly   361 QSCPTRSH-AVWEMVMNELDRREDPVNDEYLPG-----CAMVDSC-SNILTGDQFYNFLNHNFDR 418
             :||:|:. .|||:          |:|..|:.|     |..:|.| .:.|..::.:.:|..:|.|
  Fly   288 -TCPSRTFPGVWEV----------PLNTHYVEGYEGGHCPYLDQCVLHNLDEEEVFQWLQEDFSR 341

  Fly   419 HYDQNRAPLGLYFHAAWLKNNP--EFLDAFLYWIDEILANHNDVYFVTMTQVIQWMQNPRTISEV 481
            :|:||:||..:.||..|.:..|  ..|..||.|..|:    .|||.:|:||::|::.:|:.:.:|
  Fly   342 YYEQNKAPYMMPFHTNWFQTKPLENGLHKFLDWALEL----PDVYILTVTQMLQYVTDPKELRDV 402

  Fly   482 KNFEPWR-EKCVVEGKPACWVPNTCKLTSKEVPGETIN----LQTCVRCPNNYPWVSDPTGDG 539
            ...|.|: :|.|......|.:..||.|..| :|.:.:.    ::||..|||.|||:.|..|.|
  Fly   403 SQIESWKCDKSVSVAPKPCNIWQTCALPFK-IPEQNLTDTRYMETCRECPNVYPWLGDAGGTG 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
serpNP_001262062.1 CBM_14 48..105 CDD:279884 16/57 (28%)
LDLa 125..159 CDD:238060 0/33 (0%)
CE4_CDA_like_1 200..475 CDD:200596 107/284 (38%)
Cda4NP_728468.1 CBM_14 33..80 CDD:279884 16/61 (26%)
CE4_CDA_like_1 130..396 CDD:200596 107/284 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1060206at2759
OrthoFinder 1 1.000 - - FOG0003270
OrthoInspector 1 1.000 - - otm14253
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45985
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4295
66.020

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