DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment serp and chts-1

DIOPT Version :10

Sequence 1:NP_730444.1 Gene:serp / 40150 FlyBaseID:FBgn0260653 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_001360756.1 Gene:chts-1 / 181010 WormBaseID:WBGene00018607 Length:2111 Species:Caenorhabditis elegans


Alignment Length:398 Identity:76/398 - (19%)
Similarity:124/398 - (31%) Gaps:127/398 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 EKELCKDKDAGEWFR-------------LVAGEGDNCRDVIQCTSSGLQAIRCPAGLYFDIEKQT 95
            |..:||..|  ::|:             ...|....|.....||||     .|.....:|.:...
 Worm  1323 ENFMCKCPD--DYFKKGDSCVRYESRIGAACGTASGCSGGATCTSS-----FCQCQDQYDADVDE 1380

  Fly    96 C-DWKESV--KNCKSKNKERRVKPLLHTDEPLCQDGF-----------------LACGDGNCIER 140
            | .::.||  :|.|:.:..|:|..::......|..|:                 ||...|.|.:.
 Worm  1381 CYPYEPSVRSRNVKAISGRRKVNRVVSASTINCPIGYDLVNGMCVNSETLSVIQLAAPGGACEDG 1445

  Fly   141 GLFCNGEKDCSDGSDENTCDIDNDPNRAPPCDPAVCVLPDCFCSEDGT-------SIPGDLPAKD 198
            .:.|.|...|::.                     ||:.|.....::||       |.|||     
 Worm  1446 TILCTGNSVCANN---------------------VCICPGGETVQNGTCVSINTYSSPGD----- 1484

  Fly   199 VPMMITITFDDAINNNNIELYKEIFKDRKNP---NG-CSIKATYFVSHKY--TNYSAVQET--AR 255
             |..:|.|    |...|.:....|.|...|.   || ||........:..  ||...:|::  .|
 Worm  1485 -PCDLTNT----ICTGNSQCIDGICKCPNNQGAINGRCSNMGNANCGNIQCGTNQICIQDSCQCR 1544

  Fly   256 KGH----------------EIAVHSITHNDEERFWSNATVDDWAKEMAGMRIITEKF----ANIT 300
            .|:                |:...|..  :.:...:...:.|..:..:|..::.|..    .|..
 Worm  1545 PGYYQQPGSCLQDRCNCIQEVESDSCL--NRQCGMNQVCIQDQCQCRSGYLVLQETCISDRCNCV 1607

  Fly   301 DNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPT 365
            ..||..:....:...|||| ..:::|....:.                |:..|..|.|:..:|. 
 Worm  1608 QPSVDAISGGCMNQCGNNQ-VCIQDQCLCRNG----------------YYAQPETCTGDRCNCV- 1654

  Fly   366 RSHAVWEM 373
             .|.|.:|
 Worm  1655 -QHVVPDM 1661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
serpNP_730444.1 CBM_14 48..105 CDD:426342 15/72 (21%)
LDLa 125..159 CDD:238060 9/50 (18%)
CE4_CDA_like_1 200..475 CDD:200596 38/202 (19%)
chts-1NP_001360756.1 EB 98..154 CDD:460294
EB 224..280 CDD:460294
EB 300..351 CDD:460294
EB 340..392 CDD:460294
EB <438..476 CDD:460294
EB 514..563 CDD:460294
EB 596..650 CDD:460294
EB 639..692 CDD:460294
EB 681..734 CDD:460294
EB 723..776 CDD:460294
EB 808..860 CDD:460294
EB 961..1019 CDD:460294
EB <1111..1150 CDD:460294
EB 1283..1340 CDD:460294 5/18 (28%)
EB 1413..1473 CDD:460294 13/80 (16%)
EB 1462..1517 CDD:460294 17/64 (27%)
EB 1757..1812 CDD:460294
EB <1893..1930 CDD:460294
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.