DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gbeta76C and gnb1b

DIOPT Version :9

Sequence 1:NP_523720.2 Gene:Gbeta76C / 40148 FlyBaseID:FBgn0004623 Length:346 Species:Drosophila melanogaster
Sequence 2:NP_998646.1 Gene:gnb1b / 406796 ZFINID:ZDB-GENE-040426-2855 Length:340 Species:Danio rerio


Alignment Length:339 Identity:148/339 - (43%)
Similarity:228/339 - (67%) Gaps:2/339 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ETQKLYDEINGMIQKFKDDQKSKADCTLADKCGDMGDVPKIRFSSKKILKGHINKVNSVHFAGDS 71
            |..:|..|...:..:.:|.:|:.||.||:....::..|.:|:..:::.|:||:.|:.::|:..||
Zfish     3 ELDQLRQEAEQLKNQIRDARKACADATLSQITANIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDS 67

  Fly    72 RHCVTGSLDGKLIIWDTWTANKVQIIPLRSAWVMTVAFSPSGNFVACGGMDNQCTVYDVNNRDAS 136
            |..|:.|.||||||||::|.|||..|||||:||||.|::||||:|||||:||.|::|.:..|:  
Zfish    68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYSLKTRE-- 130

  Fly   137 GVAKMVKELMGYEGFLSSCRFLDDGHLITGSGDMKICHWDLEKGVKTMDFNGHAGDIAGLSLSPD 201
            |..::.:||.|:.|:||.||||||..::|.|||.....||:|.|.:|..|.||.||:..|||:||
Zfish   131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFAGHTGDVMSLSLAPD 195

  Fly   202 MKTYITGSVDKTAKLWDVREEGHKQMFFGHDMDVSSVCYHPSGFGFASCSEDQTARMYDLRADQQ 266
            .:.:::|:.|.:|||||:||...:|.|.||:.|::::|:.|:|..||:.|:|.|.|::||||||:
Zfish   196 TRLFVSGACDASAKLWDIREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

  Fly   267 IAQYEPPQKNTGFTSCALSTSGRYLMCGGIEGNVHSWDTMKQRHTGTLSGHENRITCISLCPNGM 331
            :..|.......|.||.|.|.|||.|:.|..:.|.:.|||:|....|.|:||:||::|:.:..:||
Zfish   261 LMVYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKADRAGVLAGHDNRVSCLGVTDDGM 325

  Fly   332 CLASTSWDQQVRLW 345
            .:|:.|||..:::|
Zfish   326 AVATGSWDSFLKIW 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gbeta76CNP_523720.2 WD40 <45..345 CDD:225201 137/299 (46%)
WD40 51..345 CDD:238121 136/293 (46%)
WD40 repeat 64..99 CDD:293791 19/34 (56%)
WD40 repeat 105..147 CDD:293791 20/41 (49%)
WD40 repeat 152..187 CDD:293791 17/34 (50%)
WD40 repeat 194..229 CDD:293791 15/34 (44%)
WD40 repeat 235..271 CDD:293791 15/35 (43%)
WD40 repeat 279..315 CDD:293791 15/35 (43%)
WD40 repeat 321..345 CDD:293791 7/23 (30%)
gnb1bNP_998646.1 WD40 48..340 CDD:238121 137/294 (47%)
WD40 repeat 58..95 CDD:293791 19/36 (53%)
WD40 repeat 101..141 CDD:293791 20/41 (49%)
WD40 repeat 146..181 CDD:293791 17/34 (50%)
WD40 repeat 188..223 CDD:293791 15/34 (44%)
WD40 repeat 229..265 CDD:293791 15/35 (43%)
WD40 repeat 273..309 CDD:293791 15/35 (43%)
WD40 repeat 315..339 CDD:293791 7/23 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D313727at33208
OrthoFinder 1 1.000 - - FOG0000271
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19850
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X182
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.020

Return to query results.
Submit another query.