DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wnd and VIK

DIOPT Version :10

Sequence 1:NP_649137.3 Gene:wnd / 40143 FlyBaseID:FBgn0036896 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_172853.1 Gene:VIK / 837960 AraportID:AT1G14000 Length:438 Species:Arabidopsis thaliana


Alignment Length:209 Identity:39/209 - (18%)
Similarity:61/209 - (29%) Gaps:80/209 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LITTLVIFKTSLAFENYTSVDVDL--PFAPKHVIIINTL-------------------NPHERLV 56
            |:..|.|.:..|..::|.|:....  .:.|:|::..:.|                   |...:||
plant   398 LLCLLSITEYGLITKDYRSLKTQYLQSYGPEHLLTFSNLKRTGLLTEQAPGETLTAVENKMSKLV 462

  Fly    57 V------------------HCRNKGKDLGVHALEPQEQIDFRFRVNLRRTTTY---------TCT 94
            .                  :.|..||.||   |.|  ::|..:.:...:...|         :|.
plant   463 TDKAAGKLTDAFSSLAKKSNFRGIGKKLG---LIP--RVDGEYDLKTPKDMAYIFSGAYIPLSCK 522

  Fly    95 F--------SWPG--------NAKTFDIFRVDRDDNSKST-----CGICRECIWYICETGPCR-A 137
            .        .|.|        |...|.....||:..|:.|     .|.|.     ..|....| .
plant   523 LMEQVLQRKGWTGLEEVTRLLNGNEFAEQLCDRNSGSQRTIVAVFLGGCT-----FSEISALRFL 582

  Fly   138 RRDGGAPFCFSWTS 151
            .::.|..|.|..||
plant   583 GKEAGYKFIFLTTS 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wndNP_649137.3 STKc_MAP3K12_13 167..403 CDD:270961
VIKNP_172853.1 ANK repeat 36..68 CDD:293786
ANKYR <38..>127 CDD:440430
ANK repeat 70..101 CDD:293786
ANK repeat 103..127 CDD:293786
STKc_MAP3K-like 168..420 CDD:270901 6/21 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.