DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wnd and sid-3

DIOPT Version :9

Sequence 1:NP_649137.3 Gene:wnd / 40143 FlyBaseID:FBgn0036896 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_510783.2 Gene:sid-3 / 181756 WormBaseID:WBGene00002207 Length:1237 Species:Caenorhabditis elegans


Alignment Length:1118 Identity:233/1118 - (20%)
Similarity:367/1118 - (32%) Gaps:383/1118 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 SQRSEDWQ--IPFESITELEWLGSGAQGAVFSG--RLKNET---VAVKKVKELK-------ETDI 198
            :|.|.|.:  ||.|.|...|.:|.|:...|..|  ...|.|   ||||.::::.       ..:.
 Worm    92 AQNSIDEKALIPNEQIKLYELIGEGSFAVVKRGTWTQSNGTHVNVAVKILRDISPNIMDDLRVEA 156

  Fly   199 KHLRKLDHENIIKFKGVCTQSPVFCIIMEFCPYGPLQNILKEEQ--VMLPSRLVSWSKQIALGMQ 261
            .||.||.|.::|:..|:..|..:  ::.|.|..|.|.:.|::::  ::|.|||..:..|||..:|
 Worm   157 SHLLKLQHPSLIRLYGIVRQPAM--MVFELCEGGSLLDRLRDDKKAILLVSRLHDYCMQIAKALQ 219

  Fly   262 YLHSHKIIHRDLKSPNILISTNE-VVKISDFGTSREWNEISTKMSFAG----TVAWMAPEVIRNE 321
            :|.|...:|||:.:.|||::.:| .|||.|||..|...|.....:.|.    ..||..||.:|:.
 Worm   220 FLESKHCVHRDVAARNILLARDERTVKICDFGLMRALKENEQMYTMAPQKKVPFAWCPPEALRHR 284

  Fly   322 PCSEKVDIWSYGVVLWEMLTC-EIPY---------KDVDSSAIIWGVGNNSLKLLVPSTCPEGFK 376
            ..|...|:|||||.:||:.|. |.|:         |::|:..          :|..|..|.|...
 Worm   285 KFSHASDVWSYGVTIWEVFTFGEEPWVGCRAIDVLKNIDAGE----------RLEKPKYCSERIY 339

  Fly   377 LLVKLCWKSKPRNRPSFRQILSHLDIA-----------------------GPE--LLRKTEKQYF 416
            .::|.|||..|..|..|..|...|..|                       |.|  ::..|.:.:|
 Worm   340 QIMKNCWKFNPAERCKFGAIREDLVAAMFLDAVARETYNSIQPGALQLTKGDEVVVVENTGQDWF 404

  Fly   417 -ETQKSWK-------------------------------EEVR---SH-----LKEITQN----- 436
             :.:|:.|                               ..:|   ||     ||.:..|     
 Worm   405 GQNKKNQKFGTFPRSVVFAQTNNAVAAATAVTPQKVPTAPTIRIPPSHPPPAPLKPLNNNTKTSL 469

  Fly   437 ------------GTNIHKYEQDLIKRRTAEWRHAQDIRMVY----------------------ED 467
                        |:.||....|.:..::  |.:...|..:|                      ::
 Worm   470 NDRTSKISMPVAGSFIHTGHGDPLGGQS--WGNPATIADMYLKNPVNGAPLSSMSSGAEIIASKE 532

  Fly   468 KL----QKTNQLFFELSECMSQLQEKEKEIAERE--RKLPGSGYKPN-----RRF---------- 511
            .|    :.|:|........||:::....::.|.:  .:....|:.|:     |.|          
 Worm   533 LLTNGGRSTHQPAAPSPAVMSKIRGLSLDLPEYDDFDRAFDDGFSPSKIELPREFCGNDSVISGG 597

  Fly   512 GNTIRKMQHY-------------RRRL------------NPAPAAI--------------QQQST 537
            .|:|.....|             .|.|            ||||:.|              .|..|
 Worm   598 SNSIGLANTYVMEPPKQAFDIRGNRVLPPTNKAPVLIPTNPAPSVISSTASAGITLSTNSSQMFT 662

  Fly   538 TPDPETTPESPVKCMLYAQLDSNCQPKSYLANII---PSSGLGA---------PMPNK-----NK 585
            :.|    ..|.:...|:.:|.......|...|.:   |:|.:|.         |..|:     |.
 Worm   663 SQD----RHSNMPANLFPELQHRLNQGSSTGNGVRPRPASSIGIQNNDLSMLNPQVNRPFSVVNV 723

  Fly   586 KVFRHRRN-----ASGSFGAPPKYS-PTRDRRYQSEPENR---------KVQLVERQTQTDA--- 632
            .:.:...|     .:.:..||..:| |...:|...:.:|.         |..|.:|.|.|.|   
 Worm   724 PIVQQPANIPCLVPTPAPPAPAHFSQPVSSQRVAQQQQNTLQKALNDELKGNLNKRPTGTTAPPS 788

  Fly   633 --MDVSETDISP-------SAEAPRSQPIDVPVPNHRQLPLQLQR---------VQKIAQAQARA 679
              .:....|::|       ||..|..||..:   .|.|.|:|.|:         |||..|..|..
 Worm   789 NGFNAPRADVAPVQQRPISSASIPALQPQPI---QHIQKPIQPQQVRIPPSTAPVQKPVQVSAPT 850

  Fly   680 RSG-----STSSAAGAVNPACPSNGNSLSTSELTYQDACSSPDQLIDDVMNSNER-LDMTECCSD 738
            .|.     |:.::|.|.||..|.....:|.:.:|.....::|............| ...|...||
 Worm   851 HSNVAPTTSSQASADARNPLPPKTSPPVSNTPITVAPVHAAPTTSAPSTSVVTRRPTSTTAQMSD 915

  Fly   739 NENLERLGRKVIEFINENRLSIQSNTNSVSNADNGNGGASPLELRESGNSPCLSRCSSTHSKRRK 803
            .|...|:.           :.|.|...:.|....|:...|.|.      |..:|..||..|..|.
 Worm   916 EERRSRIA-----------MDISSALPAPSALLYGSNSTSSLP------SAAVSTASSVPSTARD 963

  Fly   804 HPLGDNPNGSSIGNANGESHEQDSWSDEEGETTDYKYALRRRSIGRQPIARGMRPRRSYKAPLSQ 868
            :|:...|:                                      ||... |.|::|.:..||.
 Worm   964 NPVETRPS--------------------------------------QPHVT-MPPKKSSEPILSS 989

  Fly   869 KIAIHKRNVVIVSDEEENTSEYSHSPSSQHSTLESNTDIADMKKTQAT----------STSSNSY 923
            ::....|.....:.:.:..::....||...:|: ..|.:.|.|.....          :.|||.|
 Worm   990 EVLQPTRLPSATTSQAKPVTQPIRHPSPPVATV-IPTAVVDKKPVSQNQGSNVPLFNITNSSNGY 1053

  Fly   924 SE------------------------PEDDSSDSSDEEQGNR--------------PTEAKAEGP 950
            .:                        |.....:|.....|..              |:|.:..|.
 Worm  1054 PQLNGYPNYGNGFQAYGYGMNYHQGYPGYQGYNSYGNGMGQLALTHNAVTSLPPLVPSENRFSGT 1118

  Fly   951 ALPMGAVRSSDII 963
            |.|:|   .|||:
 Worm  1119 AQPLG---ESDIM 1128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wndNP_649137.3 STYKc 161..400 CDD:214568 82/267 (31%)
STKc_MAP3K12_13 167..403 CDD:270961 81/264 (31%)
sid-3NP_510783.2 SAM_TNK-like 9..70 CDD:188938
STYKc 107..363 CDD:214568 82/267 (31%)
PTKc_Ack_like 111..365 CDD:270636 82/265 (31%)
SH3 371..421 CDD:214620 6/49 (12%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 146 1.000 Inparanoid score I3014
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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