DRSC/TRiP Functional Genomics Resources

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Protein Alignment wnd and srms

DIOPT Version :9

Sequence 1:NP_649137.3 Gene:wnd / 40143 FlyBaseID:FBgn0036896 Length:977 Species:Drosophila melanogaster
Sequence 2:NP_001129722.2 Gene:srms / 100192213 ZFINID:ZDB-GENE-081022-95 Length:492 Species:Danio rerio


Alignment Length:399 Identity:109/399 - (27%)
Similarity:184/399 - (46%) Gaps:51/399 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 MACLQDEF-------GHLGIAATDLPFKSSDLDSPPRL----QHHNNYAEITDSSAENTCQQRWP 104
            :|.|:|||       |::.....:....||:..:...|    :.|::  |.|.|:........:.
Zfish   104 VALLKDEFANYKWYYGNINRQKAEKLLLSSENKTGSFLVRISESHSD--EYTISARSENSVFHFR 166

  Fly   105 PHVGGAGA-------AFGHPDKPIGWMY---GLLGCMKPVLSFIGKTGVIEVKSQRSEDWQIPFE 159
            .|....||       :||..|:.|.:..   ..|||      .|.:..|...:....|.|:.|.|
Zfish   167 IHRSPIGAYFVSEKISFGTLDELIRYYQQNSRSLGC------HIDQPCVQRRELFDMEPWERPRE 225

  Fly   160 SITELEWLGSGAQGAVFSG--RLKNETVAVKKVKE----LKE--TDIKHLRKLDHENIIKFKGVC 216
            ....::.||.|..|.|:..  :.:.:.||:|.:|:    |.|  .::..|:.|.|..:|:...:|
Zfish   226 EFMLVKKLGEGHFGEVWEAIWKTQKKKVAIKMLKQEDTKLDEFVKEVHALKNLHHPKLIELLALC 290

  Fly   217 TQSPVFCIIMEFCPYGPLQNILK--EEQVMLPSRLVSWSKQIALGMQYLHSHKIIHRDLKSPNIL 279
            ::.....|:.|....|.|::.|.  |.|::..:.|:..:.|||.||.||....|:||||.:.|||
Zfish   291 SRGEPVYIVTELMAKGSLKSYLSSAEGQLLTSAHLIYMAAQIAEGMAYLEDRHIVHRDLAARNIL 355

  Fly   280 ISTNEVVKISDFGTSREWNEI------STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSYGVVLWE 338
            :..:.|.|::|||.:|...:.      :||:    .|.|.|||....:..|.|.|:||:||:|:|
Zfish   356 VGNDLVCKVADFGLARIIKDSVFTASKTTKI----PVRWTAPEAALYQRFSVKSDVWSFGVLLYE 416

  Fly   339 MLT-CEIPYKDVDSSAIIWGVGNNSLKLLVPSTCPEGFKLLVKLCWKSKPRNRPSFRQILSHLDI 402
            |:: .::||....:..::..: ::..:|..|:.||.....::..||.::...||||..:.|.||.
Zfish   417 MMSRGKMPYDGKTNKEVMEAL-SSGYRLACPNHCPPNIYRIMLECWNNEASKRPSFHALHSQLDN 480

  Fly   403 AGPELLRKT 411
            ....|..||
Zfish   481 IYSRLYFKT 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wndNP_649137.3 STYKc 161..400 CDD:214568 75/255 (29%)
STKc_MAP3K12_13 167..403 CDD:270961 77/252 (31%)
srmsNP_001129722.2 SH3 52..106 CDD:302595 0/1 (0%)
SH2 114..197 CDD:214585 15/84 (18%)
PKc_like 220..481 CDD:304357 80/265 (30%)
STYKc 229..478 CDD:214568 75/253 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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