DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)76BDm and SPBC1734.07c

DIOPT Version :9

Sequence 1:NP_001262058.1 Gene:l(3)76BDm / 40140 FlyBaseID:FBgn0260655 Length:1319 Species:Drosophila melanogaster
Sequence 2:NP_001342768.1 Gene:SPBC1734.07c / 2539876 PomBaseID:SPBC1734.07c Length:618 Species:Schizosaccharomyces pombe


Alignment Length:682 Identity:148/682 - (21%)
Similarity:243/682 - (35%) Gaps:201/682 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 IIRNIFSPLIGVLSSPQADEICHRNNL--SFVELLQPFA-KLPNDAHFRDVSGTSVSVRGLRLNF 75
            ||:..::|.:.||.|..|||...|...  .|.|||.||. ::....:.|.::|..:::..|.|:|
pombe    49 IIQEAYAPRVSVLCSRDADEFAMRKGYPKGFWELLYPFGDRIRGKVNRRGMNGEMLTLENLNLHF 113

  Fly    76 CDVDWRPPQTILARKMLNESVTNAHNDKTRLATIAGIDLEL--------PTSEPWF-------EQ 125
            ..:|                ...:|..:....::..:..|.        |.|:..|       |:
pombe   114 VPID----------------ALESHLSEASFPSLRSVLCERYPGLVSPEPPSDYSFGVHYKNVER 162

  Fly   126 WRETFL---TVQFP--------------ADHEFTRHLLSCLLVLSSADPQIVETAHKLGQRVQQM 173
            |..|..   ..|.|              ...|...|.::.|:|::|.:|...|:...|      :
pombe   163 WAWTLAHEGNYQMPLPVYVRQLLTGIPITPFETFSHPVAHLVVVTSHNPSPFESLRSL------I 221

  Fly   174 QSITPQKLPKW-FHPTEVLNSYVVLHEASQGDLSKAQQGFELLKSTFGDSKCFLVSINSMDSQGA 237
            .||....||.: |:....|  :|.:|:..|.||..:...|:.:|.||||...||    .:.||.|
pombe   222 NSIPYLSLPAFVFNDINYL--FVYVHDEDQHDLELSMAIFDTMKQTFGDCGYFL----RLHSQKA 280

  Fly   238 AEVPDHWATFIKRQPKSDPNLPSTDLSAPKSPQEAVSVISMPAMQMSQLLEGVSAQDSDLAMLHP 302
            ....:|...|        |.  |:.|||                  .:.|..:|..|:::.:|. 
pombe   281 TLDYEHTVPF--------PT--SSWLSA------------------EERLHLLSNTDTEIRLLF- 316

  Fly   303 LSPMQESATEAINSKFSISSESIASQTINPNVWGNELEADAPHGGCLTSRDIDNLRHFVQDYAVR 367
                                ||                            |.::||......|..
pombe   317 --------------------ES----------------------------DNESLRRLSSHIAFN 333

  Fly   368 ALIPYIEHLVAILAEGVTN-KKGVSKSLLSATKRWFVTSKPGAGAN---NQNAVIYTNESAELQT 428
            .::.|::..|....:...: ::|::..||.|::::..:|.....:|   :.||  |...|.|...
pombe   334 GIVSYLDKCVRAWDDQYASPRRGITGKLLFASRKYLSSSNASTNSNYFPSSNA--YRPFSPEAYL 396

  Fly   429 RKLGDLYFMFGHYNLAFQSYHQAKRDFNADSAWQYYAGALEMAALS--------AFMLGTAQRKT 485
            |||.|..||...|:.|.|.|..|.|.:..|.|..|.|.:|||..::        .:|..|...:.
pombe   397 RKLADYSFMLRDYSHANQIYEIASRQYENDGACLYSAASLEMIVITEHILHLKMPYMSLTNTLRI 461

  Fly   486 YDYMEDAIVCYLTVCKLQQF-----ATRATLL---SMECLKTAR-----------LYSE----VA 527
            .:||:.|::.||.    :.|     |.|..||   .:.||...:           |||:    |.
pombe   462 NEYMQSAMLNYLN----KSFNSYYHAARCFLLLGQFLSCLPAPKVDDAANWNAGLLYSKRLGPVG 522

  Fly   528 KQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMH----RKYAFHIVLAGNRYSRAGQRKHAYRCY 588
            :.:|..       ::..|.:..:|....:..|..    ||.|...||..:.:.|......|....
pombe   523 RAMIFQ-------QTHTLFKSLSYLKTESTDPFSNKRTRKAALWCVLTADAWLRCRIPFRAKPFV 580

  Fly   589 RQAYQVFQKREWS------LAEDHIQYTVAKQ 614
            .:|...:.|.:|.      .|.|.::  |:||
pombe   581 EEAKLFYGKIDWKDLKECVAALDEVE--VSKQ 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)76BDmNP_001262058.1 TRAPPC-Trs85 157..608 CDD:289508 108/496 (22%)
SPBC1734.07cNP_001342768.1 TRAPPC-Trs85 211..599 CDD:315421 106/489 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 86 1.000 Domainoid score I2168
eggNOG 1 0.900 - - E1_KOG1938
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004433
OrthoInspector 1 1.000 - - otm47309
orthoMCL 1 0.900 - - OOG6_102833
Panther 1 1.100 - - LDO PTHR12975
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1544
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.930

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