DRSC/TRiP Functional Genomics Resources

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Protein Alignment ash1 and Setmar

DIOPT Version :10

Sequence 1:NP_524160.2 Gene:ash1 / 40133 FlyBaseID:FBgn0005386 Length:2226 Species:Drosophila melanogaster
Sequence 2:NP_001020219.1 Gene:Setmar / 500281 RGDID:1565882 Length:315 Species:Rattus norvegicus


Alignment Length:339 Identity:96/339 - (28%)
Similarity:139/339 - (41%) Gaps:87/339 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1251 KQSLMPPPAKVNKKPGLEEQ---VG----PASLLP------PPP--YCEKYLRRTEMDFELPYDI 1300
            |.|....|::...:..:|:|   .|    |.||.|      |.|  |...::....:|.:     
  Rat     8 KLSFEIAPSEEESEATIEQQDVACGLENLPVSLWPLGAGPRPKPFQYTPDHVAGPGVDMD----- 67

  Fly  1301 WWAYTNSKLPTRNVVPSWNYRKIRTNVYAESVRPNLAGFDHPTCNC----KNQGEKSCLDNCLNR 1361
                     ||:...|  ....|:|        |.:.|    ||:|    .|..:..||.:..:.
  Rat    68 ---------PTQITFP--GCACIKT--------PCVPG----TCSCLRHESNYNDNLCLRDVGSE 109

  Fly  1362 MVYT----ECSPSNCPAGEKCRNQKIQRHAVAPG----VERFMTADKGWGVRTKLPIAKGTYILE 1418
            ..|.    ||:.. |..||.|||:.:|     .|    ::.|.|..||||:||...|.||.::.|
  Rat   110 AKYAKPVFECNVL-CQCGEHCRNRVVQ-----SGLQFLLQVFQTEKKGWGLRTLEYIPKGRFVCE 168

  Fly  1419 YVGEVVTEKEFKQRMASIYLNDTH--HYCL----HLDGGLV----IDGQRMGSDCRFVNHSCEPN 1473
            |.|||:...|.::|   |:|...|  :|.:    |...|.|    :|...:|:..||:|||||||
  Rat   169 YAGEVLGFSEVQRR---IHLQTAHDPNYIIALREHTYNGQVMETFVDPTYIGNIGRFLNHSCEPN 230

  Fly  1474 CEMQKWSVNGL-SRMVLFAKRAIEEGEELTYDYNFSLFNPSE---------GQ---PCRCNTPQC 1525
            ..|....::.: .::.|||.:.|..||||:|||:....|...         ||   ||.|....|
  Rat   231 LLMIPVRIDSMVPKLALFAAKDILPGEELSYDYSGRFLNQISSKDKERIDCGQPRKPCYCGAQSC 295

  Fly  1526 RGVIGGKSQRVKPL 1539
            ...:...|....||
  Rat   296 ATFLPYDSSLYGPL 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ash1NP_524160.2 PHA03247 <1018..1281 CDD:223021 11/42 (26%)
AWS 1340..1388 CDD:197795 16/55 (29%)
SET_ASH1L 1391..1531 CDD:380951 56/166 (34%)
Bromo_ASH1 1680..1787 CDD:99955
PHD_ASH1L 1858..1900 CDD:277023
BAH_polybromo 1929..2073 CDD:240068
SetmarNP_001020219.1 SET_SETMAR 50..304 CDD:380942 82/290 (28%)
Blue background indicates that the domain is not in the aligned region.

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