DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ash1 and Phf3

DIOPT Version :9

Sequence 1:NP_001246834.1 Gene:ash1 / 40133 FlyBaseID:FBgn0005386 Length:2226 Species:Drosophila melanogaster
Sequence 2:NP_001074549.1 Gene:Phf3 / 213109 MGIID:2446126 Length:2025 Species:Mus musculus


Alignment Length:1668 Identity:317/1668 - (19%)
Similarity:507/1668 - (30%) Gaps:623/1668 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSCSQNETAAAKVLETQRAQESGSE--NEE---------TDSITDQSSQS--KSIKSATQFSVQR 52
            |.|| .......:::....:|||::  :||         .|.:.|.|.:|  ||.:...|..|: 
Mouse    77 MPCS-TVVGLDDIMDEGVVKESGNDTIDEEELILPNRSLRDRVEDNSVRSPRKSPRLMAQEQVR- 139

  Fly    53 SDTDGLRMRISAIRPTLGVVATKKPPKSRKMSTQDTESGCSEAKNRAVSKKVKVKRKKLASSSGI 117
                .||....|.|.....::||| |..:.:||  ::.|...|      ::.:.|.:..||    
Mouse   140 ----SLRQSTIAKRSNAATLSTKK-PSGKTLST--SKVGVKPA------ERCQGKEEVYAS---- 187

  Fly   118 SKSDKVSKSKKSQISAFSSDSEDDLPLKVHQQRAPRVLLSAIIQAAQS--------------ASK 168
            .||:...:|::|...|...|.            ||.|..|::..:..|              |..
Mouse   188 LKSEHPKESRRSGRHAEQMDV------------APEVSASSVDSSVSSCAGMKEEAEFDPKHACN 240

  Fly   169 PTLDIGISSSDNELPNLVQAAIKRVESDTEDTTVEGSFRKAAKDKNLPQYQSTLLQDFMEKTQM- 232
            ...::.:.|.:.:.|.|.:.:     :..|:..:|......||..:.|.::..:.:|  |::.: 
Mouse   241 NQGEVNVPSPELDCPLLSETS-----ASVEEKNIEALMECKAKTNSSPLFKFPVRED--EQSDLV 298

  Fly   233 ---LGQTVNAKLAEEKVAKAKEETLV-----QTA------------------VPRKRRGRP---- 267
               |..|:..|.|..|..:..||...     |||                  ...|..|..    
Mouse   299 SGELNDTIEGKDAGGKPDQESEEVKFPCEGDQTAEEPESSDVSSDSACANKNKAEKNEGAECHLE 363

  Fly   268 -KKVVPTVPAPGNSGPAIN-----------ESADSGVIST------------------TSTTQST 302
             |..|..|..|.|| |..|           ||.|:.:.||                  .||.::|
Mouse   364 LKNTVDIVDKPENS-PQRNELETLGYGEDTESNDARLQSTEFNKSDLEEVDACAFEPEASTLENT 427

  Fly   303 --------------TPSPKMQNENAVPTGSLPIASSSKPK-IDMAYLDKRMYATERVLYPPPR-- 350
                          |.|.||:..|.....|.....:.||| |......|:...||     .||  
Mouse   428 ICDVLDQNSKQLNITQSIKMETANLQDDRSGLEPKNIKPKHIKSVTHSKQSMTTE-----TPRKT 487

  Fly   351 ---------SKRRQNNKKTACSSSNKE------------ELQLDPLWREIDVN---KKFRLRSMS 391
                     ||.:.|.|....:|...|            :.|.|.:|:....|   |..:.::.|
Mouse   488 VAAKHEVGHSKTKSNVKAVKRNSGEPEPQPDSQRPVKVRKKQGDKVWKSQSCNSGVKSVKSQAHS 552

  Fly   392 VGAASGTGASTTICSKVLA--------AKSGYVSD----------------------------YG 420
            |........:|...||.|.        ..||:..:                            .|
Mouse   553 VLKRMPQDQNTMQISKPLTHPHSDKLHGHSGFSKEPPHPVQTGHLVHSSQKQSQKPQQQAAVGKG 617

  Fly   421 SVRHQRSSHNH--NSGYKSDASCKSRYSTKSCMSRRSR--------------------------- 456
            | .|.:..|:|  :...|.|...|.|...::...|:.|                           
Mouse   618 S-SHVKDEHDHPVSEHLKEDDKLKPRKPDRNLQPRQRRSSRSFSLDEPPLFIPDNIATVKKEGSD 681

  Fly   457 -------------AKSCGYRSDCKESGKSGLRMRRKRRASMLLKSSADDTVEDQDILQLAGLSLG 508
                         :|.||:   ||:  ..|.|.       |:.....||......:    ||||.
Mouse   682 QTTSIESKYMWTPSKQCGF---CKK--PHGNRF-------MVGCGRCDDWFHGDCV----GLSLS 730

  Fly   509 QS---SEESNEYISKPSLKSLPTTSASKKYGEINRYVTTGQYFGRGGSLSATNPDNFISKMM--- 567
            |:   .||..||:....     .....||...::..:...|     ..:.|.:.|    |.|   
Mouse   731 QAQQMGEEDKEYVCVRC-----CAEEDKKTDILDTEIFEAQ-----APIEAHSED----KRMECG 781

  Fly   568 -----------NQRKETPAPSKSSCKIKSRRSSAASMCSS---------YVSGVSRMRRRHRRKS 612
                       ::.:.:..|.|...||..|.|......|.         .::.:.::.:.|..:.
Mouse   782 KLTSSKHAVTDDKHRHSDDPGKHKVKILKRESGEGKTSSDSRDNEIKKWQLAPLRKLSQPHLPRR 846

  Fly   613 FSHNKSLNIDSKLLTEIEIITSTFNSRCRIQDDRLTGSSGKEKLLADANKLQATLAAPSPAQQLT 677
            .|..||    .|:..|...:.||        .:|:..|...||......|::             
Mouse   847 SSEEKS----EKIAKESTALAST--------GERVARSGTHEKQETKKKKME------------- 886

  Fly   678 LNGG----GPASTLSKP------------LKRGLKKR------------------KLSEPLVDFA 708
             .||    .||:| |||            ||..|.||                  |:.:.|..|.
Mouse   887 -KGGPNVHPPAAT-SKPSADQIRQSVRHSLKDILMKRLTDSNLKIPEEKAAKVATKIEKELFSFF 949

  Fly   709 MLSASASGTPNGSGSSNGNTKRRHKKSQSNDSSSPDDHKLPLKKRHYLLTPGERPPAEVAFANGK 773
            .             .::...|.:::....| ...|.::.| .||    :..||..|..:.    :
Mouse   950 R-------------DTDAKYKNKYRSLMFN-LKDPKNNIL-FKK----VLKGEVTPDHLI----R 991

  Fly   774 LNAEAWAAAAAAA---KSTASTKSQAQFNARSVKSALTPKKRH-----------LLEQPTSVSGA 824
            ::.|..|:...||   :....|....:...|.|:.....|..|           :.||..::...
Mouse   992 MSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEAAIEIQ 1056

  Fly   825 GSSASNSPLRIVVDNNSISGGKLLDISPSSLCSLKQQRR-------------------------- 863
            ..||:.|     ::...:|..:..::..:|..:..|.|:                          
Mouse  1057 EPSANKS-----MEKPDVSEKQKEEVDSTSKDTTSQHRQHLFDLNCKICIGRMAPPIDDLSPKTV 1116

  Fly   864 ----GGAAKQKVSAAKDLVQLQSPAGSYPPPGVFEPSVELEIQIPLSKLNES----VITKAEVES 920
                |||.|...:.|:.|....|...:.....:||   |.:.:.|.|..:.:    :....||||
Mouse  1117 KVVVGGARKHSDNEAESLADALSSTTNILTSDLFE---EEKQESPKSTFSPTPRPEMPGTVEVES 1178

  Fly   921 PLLSALDIKEDTKKEVGQRVVETLLHKTGGNLLLKRKRKKINRTGF---PTVRR---KKRKVSVE 979
            ..|:.|                        |.:.|         ||   |:|.:   |...||  
Mouse  1179 TFLARL------------------------NFIWK---------GFINMPSVAKFVTKAYPVS-- 1208

  Fly   980 QQTTAVIDEHEPEFDPDDEPLQSLRETRSSNNVNVQAAPNPPLD-CERVPQAG------------ 1031
                     ..||:..:|.|        .|..|..:.:|....| .|::..:|            
Mouse  1209 ---------GSPEYLTEDLP--------DSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPV 1256

  Fly  1032 ---------------EARETF-VARTNQKAPR----LSVVALERLQRPQTPARG------RPR-- 1068
                           .:|:.: ||..|.|..:    :.:.|.:::..|..|..|      ||.  
Mouse  1257 TEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLL 1321

  Fly  1069 -----GRKPKNREQAEAAPQ---PPPKSEPEIRPAKKRGR------------------------- 1100
                 .:|.|....|.|.|.   ..|:|.|.:.|..|:|:                         
Mouse  1322 LGLIIRQKLKRPHSASAGPSHTGETPESAPIVLPPDKKGKMESCTEEAAEEESDFFNSFTTVLHK 1386

  Fly  1101 ---QPKQPVLEEPPPTPPPQQKKNKMEP--NIRLPDGI------DPNTNFSCKIRLKRRKNLEA- 1153
               :|.||:.|:.|....|..:..|.||  .:|...|:      .|:|.......|.....|:: 
Mouse  1387 QRNKPSQPLQEDLPTAAEPLMEVTKQEPPKPLRFLPGVLIGWDNQPSTLELANKPLPVDDILQSL 1451

  Fly  1154 -GTQPKKEKPVQPV----TVEEIP-------PEIPVSQEEID----AEAEAKRLD------SIPT 1196
             ||..:..:..||:    |::|||       |::    |:||    .|.:||.:.      |:.|
Mouse  1452 LGTTGQVYEQAQPLVEQSTLKEIPFINDQANPKV----EKIDKVEVTEGDAKEIKVKAENISVST 1512

  Fly  1197 -----EHDPLPASESHNPGPQDYASCSESSEDKASTTSLRKLS 1234
                 |......|.|.:|||....|......|.::...|..||
Mouse  1513 SKNSGEETSSVGSSSISPGPLASLSLRGKPPDVSTEAFLTNLS 1555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ash1NP_001246834.1 AWS 1340..1388 CDD:197795
SET 1392..1512 CDD:214614
Bromo_ASH1 1680..1787 CDD:99955
PHD_ASH1L 1858..1900 CDD:277023
BAH_polybromo 1929..2073 CDD:240068
Phf3NP_001074549.1 PHD_PHF3 697..747 CDD:277108 18/65 (28%)
TFIIS_M 904..1017 CDD:369395 22/135 (16%)
PHA03369 <983..1184 CDD:223061 37/212 (17%)
SPOC 1181..1327 CDD:369497 32/197 (16%)
SF-CC1 1916..>2025 CDD:273721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4489
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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