DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG14100 and Tarbp1

DIOPT Version :10

Sequence 1:NP_649130.2 Gene:CG14100 / 40132 FlyBaseID:FBgn0036889 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001153379.1 Gene:Tarbp1 / 212728 MGIID:4936930 Length:1579 Species:Mus musculus


Alignment Length:255 Identity:57/255 - (22%)
Similarity:96/255 - (37%) Gaps:57/255 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 FSQKDQLALVKEEVGVAQVETGTKIYKVPQHDLKTWSSL---VTPPGLMAIFDRPSDKGLEKNLA 224
            :||:||.:.:.|....::                 |:.:   :.|.|..|:     :..||....
Mouse  1367 WSQQDQGSTLGEADSQSE-----------------WADVQKKIIPWGQSAL-----ESDLELEFQ 1409

  Fly   225 EQ-QRLGSQPFPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFR 288
            :: .:||.....:.||...|.:|.|||.:.|||.....:.:||          .:|:.....||:
Mouse  1410 DRAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVV----------GSLQCVSDRQFQ 1464

  Fly   289 VPIRDDVTWDELALTIPPEAADDCHVFIAETNQRKREN------NQTIDYADIK--GLGAHNLLI 345
            ........|..|....|.:       .:....|:|.|.      .||...:|:.  .....:||:
Mouse  1465 HLSVSAEQWLPLVEVRPSQ-------LMNYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLL 1522

  Fly   346 IGGESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLIHQASE 405
            :|.|..|:.      .||:.....|:.||....|.||||..:..||::|..|:.:...:|
Mouse  1523 LGNEREGIP------ANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAE 1576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14100NP_649130.2 SpoU_sub_bind 141..215 CDD:429793 9/54 (17%)
SpoU-like_RNMTL1 236..395 CDD:349979 41/166 (25%)
Tarbp1NP_001153379.1 COG3903 <6..259 CDD:443109
SpoU-like_TRM3-like 1422..1566 CDD:349964 41/166 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.