DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and RPL37B

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_010788.1 Gene:RPL37B / 852111 SGDID:S000002908 Length:88 Species:Saccharomyces cerevisiae


Alignment Length:81 Identity:19/81 - (23%)
Similarity:27/81 - (33%) Gaps:20/81 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PKDRRKTDDEKLLINVSGRR-FETWRNTLEK--YPDTLLGSNEREFFYDEDCKEYFFDRDPDIFR 93
            |...::.:....|.|..||| |...:.|...  ||    .:..|...:....|.          |
Yeast     6 PSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYP----SAKTRSHNWAAKAKR----------R 56

  Fly    94 HILNYYRTGKLHYPKH 109
            |...   ||::.|.||
Yeast    57 HTTG---TGRMRYLKH 69

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 19/81 (23%)
Ion_trans 188..415 CDD:395416
DUF3399 445..540 CDD:403174
RPL37BNP_010788.1 PTZ00073 1..83 CDD:240257 19/81 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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