DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnq3

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_021323522.1 Gene:kcnq3 / 799747 ZFINID:ZDB-GENE-070912-301 Length:795 Species:Danio rerio


Alignment Length:481 Identity:110/481 - (22%)
Similarity:187/481 - (38%) Gaps:128/481 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 EDYRDRK--------------RENA------ERLMDDKLSENGDQNLQQL-------------TN 166
            ||.|:||              |:.|      .|.:|.|   .|.||:..|             .|
Zfish    13 EDSRERKSALAGDLEQCAGQERDGALLLVGSGREVDFK---RGSQNIGLLAKTPLGYTRPVKRNN 74

  Fly   167 MRQK-----MWRAFENP-------HTSTSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTL 219
            :|::     ::.|.|.|       |    |.||..|.|..| :|::....|     |....|..|
Zfish    75 IRKRRIQNLIYDALERPRGWALLYH----AFVFLIVLGCLI-LSILTTFKE-----HEKDSAHWL 129

  Fly   220 PCGERYKIVFFCLDTACVMIFTAEYLLRLFAA---------PDRCKFVRSVMSIIDVVAIMPYYI 275
                      ..|:|..:.||..|:.||::||         ..|.||.|..:.::|:..::....
Zfish   130 ----------VILETFTIFIFGGEFALRIWAAGCCCRYKGWRGRLKFARKPLCVLDIFVLIASVP 184

  Fly   276 GLGITDNDDV-SGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASEL------GFLVFSLAM 333
            .:.:.:..:| :.:..:||..::.|:.:..|.....::||..:.:.:.||      |||      
Zfish   185 VVAVRNQGNVLATSLRSLRFLQILRMLRMDRRGGTWKLLGSAIYTHSKELITAWYIGFL------ 243

  Fly   334 AIIIFATVMFYAEKNVNGT----------------NFTSIPAAFWYTIVTMTTLGYGDMVPETIA 382
            ::|:.:.:::..||:...|                :|.:...|.|:.::|:||:||||..|:|.|
Zfish   244 SLILASFLVYLVEKDDETTELHRDTDGPSPTPAPQDFDTYADALWWGLITLTTIGYGDKTPKTWA 308

  Fly   383 GKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSK 447
            |:::.|..:|.||...|||..::.|..: :..|.|...|...:|:...|.:    ..:...:.|.
Zfish   309 GRLLAGTFALIGVSFFALPAGILGSGLA-LKVQEQHRQKHFEKRRHPAASL----IQAAWRYYST 368

  Fly   448 KKAAE---ARWAAQESGIELDDNYRDE-DIFELQHHHLLRCLEKTTDREF---VELEIPFNGQPK 505
            ....|   |.|...|:.|.|....:|. ::...|...||..:..:|.|..   ..:.:|......
Zfish   369 NPVREDLIATWRFYETVISLPCFRKDPLEVMASQKLSLLDRVRLSTPRPSTVRARVMMPAANPES 433

  Fly   506 RPG----------SPSPMASPAHSTN 521
            .||          |||....||..:|
Zfish   434 VPGNCGPAEAIEESPSKEGKPAGFSN 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 6/22 (27%)
Ion_trans 188..415 CDD:459842 60/258 (23%)
DUF3399 471..535 CDD:463381 14/65 (22%)
kcnq3XP_021323522.1 Ion_trans 94..343 CDD:459842 65/275 (24%)
KCNQ_channel 439..637 CDD:460954 6/21 (29%)
KCNQC3-Ank-G_bd 703..791 CDD:463411
Blue background indicates that the domain is not in the aligned region.

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