DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnd2

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_001076336.1 Gene:kcnd2 / 570188 ZFINID:ZDB-GENE-041210-70 Length:630 Species:Danio rerio


Alignment Length:536 Identity:371/536 - (69%)
Similarity:433/536 - (80%) Gaps:9/536 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ASVAAWLPFARAAAIGWVPIATHPLPPPPMPKDRRKTDDEKLLINVSGRRFETWRNTLEKYPDTL 66
            |.|||||||||||||||:|:|:.|:|||  |:|:::..|..:::||||.||:|||||||:|||||
Zfish     3 AGVAAWLPFARAAAIGWMPVASAPMPPP--PRDKKRGQDGLIILNVSGTRFQTWRNTLERYPDTL 65

  Fly    67 LGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGD 131
            |||.||:||:.|:..||||||||||||||||:|||||||||:|||:::||||||||||:|::|||
Zfish    66 LGSTERDFFFHEETNEYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGIIPEIIGD 130

  Fly   132 CCYEDYRDRKRENAERLMDDKLSENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIA 196
            ||||:|:||:||||||:.||:.::|.:..:....:.|:.||||||||||||.|||||||||||||
Zfish   131 CCYEEYKDRRRENAERIQDDEENDNNNDLVMPDLSFRESMWRAFENPHTSTMALVFYYVTGFFIA 195

  Fly   197 VSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSV 261
            ||||||||||||||....||..|.|||||.:.|||||||||||||.||||||.|||.|.|||:||
Zfish   196 VSVMANVVETVPCGISLNRAKELSCGERYALAFFCLDTACVMIFTVEYLLRLIAAPSRYKFVKSV 260

  Fly   262 MSIIDVVAIMPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGF 326
            ||||||||||||||||.:|||:||||||||||||||||||||||||.||||||||||||||||||
Zfish   261 MSIIDVVAIMPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSAGLRILGYTLKSCASELGF 325

  Fly   327 LVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCS 391
            |:|||.|||||||||||||||..:.:.|||||||||||||||||||||||||:||.|||.|.:||
Zfish   326 LLFSLTMAIIIFATVMFYAEKGSSASKFTSIPAAFWYTIVTMTTLGYGDMVPKTIMGKIFGSICS 390

  Fly   392 LSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSKKK----AAE 452
            ||||||||||||||||||||||||:|||:||:||:|.||||||.||:....|::..|:    ...
Zfish   391 LSGVLVIALPVPVIVSNFSRIYHQSQRAEKRRAQKKTRLARIRAAKSGGANAYLQYKRNGMLVDM 455

  Fly   453 ARWAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTDREFVELEIPFNGQPKRPGSPSPMASPA 517
            ...|::|:|..|  ..:....||.||||||.||||||:.|||: |..:...........|..|.:
Zfish   456 EEEASKEAGQAL--VCKANPTFETQHHHLLHCLEKTTNHEFVD-EQTYETSCMEVSLAKPSMSRS 517

  Fly   518 HSTNSAAGLLQSCCGR 533
            .|.:|:...|.|||.|
Zfish   518 SSMSSSPHGLSSCCTR 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 98/137 (72%)
Ion_trans 188..415 CDD:395416 194/226 (86%)
DUF3399 445..540 CDD:403174 32/93 (34%)
kcnd2NP_001076336.1 Shal-type 3..28 CDD:288455 19/24 (79%)
BTB 42..139 CDD:197585 73/96 (76%)
BTB_2 42..131 CDD:280393 67/88 (76%)
Ion_trans 228..416 CDD:278921 165/187 (88%)
Ion_trans_2 330..410 CDD:285168 67/79 (85%)
DUF3399 444..548 CDD:288712 32/93 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 167 1.000 Domainoid score I3813
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40828
Inparanoid 1 1.050 747 1.000 Inparanoid score I557
OMA 1 1.010 - - QHG48930
OrthoDB 1 1.010 - - D221939at33208
OrthoFinder 1 1.000 - - FOG0001867
OrthoInspector 1 1.000 - - otm25710
orthoMCL 1 0.900 - - OOG6_103639
Panther 1 1.100 - - LDO PTHR11537
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4179
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.870

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