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Protein Alignment Shal and kcnq5a

DIOPT Version :9

Sequence 1:	NP_001097646.1	Gene:	Shal / 40129	FlyBaseID:	FBgn0005564	Length:	571	Species:	Drosophila melanogaster
Sequence 2:	XP_021336521.1	Gene:	kcnq5a / 556841	ZFINID:	ZDB-GENE-090312-185	Length:	1030	Species:	Danio rerio

Alignment Length:	412	Identity:	90/412 - (21%)
Similarity:	166/412 - (40%)	Gaps:	78/412 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly   143 ENAERLMDDKLS----------ENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAV 197
            ||..|....:||          ::|.:| .:...::..::...|.|.    |..|.|....|..|
Zfish    57 ENQRRNQGARLSLLGKPLAYSAQSGRRN-ARYRKLQNYLYNVLERPR----AWAFVYHAFVFTLV 116

  Fly   198 --SVMANVVETVPC-----GHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAA---- 251
              .::.:|..|:|.     .|         |       ...|:...:::|..||::|:::|
Zfish   117 FGCLVLSVFSTIPAHMDLSNH---------C-------LLILEFVMIVVFGLEYIIRIWSAGCCC 165

  Fly   252 -----PDRCKFVRSVMSIIDVVAIMP--YYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQG 309
                 ..|.:|.|....:||::.::.  ..:..|...|...:.|..:||..::.|:.:..|....
Zfish   166 RYRGWQGRLRFARKPFCVIDIIVLIASIAVVSAGSQGNIFATSALRSLRFLQILRMVRMDRRGGT 230

  Fly   310 LRILGYTLKSCASEL------GFLVFSLAMAIIIFATVMFY-AEKNVNGTNFTSIPAAFWYTIVT 367
            .::||..:.:.:.||      ||||       :||::.:.| .||..| ..|.:...|.|:..:|
Zfish   231 WKLLGSVVYAHSKELVTAWYIGFLV-------LIFSSFLVYLVEKEFN-KQFATYADALWWGTIT 287

  Fly   368 MTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLAR 432
            :||:||||..|:|..|:::....:|.|:...|||..::.|.|:....:..|....:.:|....:.
Zfish   288 LTTIGYGDKTPQTWTGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAASL 352

  Fly   433 IRIAKASSGAAFVSKKKAAEARWAAQESGIE-LDDNYRD--EDIFELQHHHLLRCLEKTTDREFV 494
            |:....|..|   .:...:.|.|......:. .....:|  |.|....|.:..|...:.|.|::.
Zfish   353 IQCVWRSYAA---DENSVSIATWKPHLKALHTCSPTKKDQGESISSKGHSNRQRLFRRYTTRKYS 414

  Fly   495 ELEIPFNGQPKRPGSPSPMASP 516
            : ::.|..:.:       ||||
Zfish   415 Q-KLSFRERVR-------MASP 428

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.