DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and kcnb1

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_021332945.1 Gene:kcnb1 / 555284 ZFINID:ZDB-GENE-090831-3 Length:834 Species:Danio rerio


Alignment Length:546 Identity:181/546 - (33%)
Similarity:284/546 - (52%) Gaps:74/546 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PFARAAAIGWVPIATHPLPPPPMPKDRRKTDDEKLLINVSGRRFET-WRNTLEKYPDTLLGSNER 72
            |.|..:.:|  ..:|..|||.|:...|..:...::.:||.|...|. || ||::.|.|.||..  
Zfish     4 PSAGMSKVG--SRSTASLPPEPVDIIRSMSCYRRVKLNVGGLPHEVLWR-TLDRLPRTRLGKL-- 63

  Fly    73 EFFYDEDCK-----------------EYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA 120
                 .|||                 ||||||.|..|..|||:|||||||..:..|..|:.:||.
Zfish    64 -----RDCKTHESLMEVCDDYNLEDNEYFFDRHPGAFTSILNFYRTGKLHMMEEMCALSFSQELD 123

  Fly   121 FFGIMPDVIGDCCYEDYRDRKRENAERL------MDDKLSENGDQNLQQLTNMRQKMWRAFENPH 179
            ::|:....:..||...|..:|.:..|.|      :.|:..|..|...  .:..|:|:|...|.|.
Zfish   124 YWGVDEIYLESCCQARYHQKKEQMNEELKREADTLKDREGEEFDNTC--CSEKRKKLWDLLEKPG 186

  Fly   180 TSTSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEY 244
            :|.:|.:...::..||.:|.:|..:.|:|........|......:...|    :..|:..||.||
Zfish   187 SSVAAKILAIISILFIVLSTIALSLNTLPELQETDEFGQTTDNTQLAHV----EAVCIAWFTMEY 247

  Fly   245 LLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIGLGITDND-------DVSGAFVTLRVFRVFRIFK 302
            |||..::|::.||.:..:::||::||:|||:.:.:|:::       :|.......|:.|:.||.|
Zfish   248 LLRFLSSPNKWKFFKGPLNVIDLLAILPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRILK 312

  Fly   303 FSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVT 367
            .:|||.||:.||:||:...:|||.|:..|||.|:||::::|:|||:.:.|.|.||||:||:..:|
Zfish   313 LARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDEDDTKFKSIPASFWWATIT 377

  Fly   368 MTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLAR 432
            |||:||||:.|:|:.||||||:|.::||||||||:|:||:|||..|.:.:|.:|...:|:|    
Zfish   378 MTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQKRQEKAIKRREA---- 438

  Fly   433 IRIAKASSGAAFVSKK-KAAEARWAAQESGIELDDNYRDEDIFELQHHHL----------LRCLE 486
              :.:|....:.||.. :.|.:|.......:.:|...|.:|      :||          ....|
Zfish   439 --LERAKRNGSIVSMNVREAFSRGTDLLDVVVMDKGERSQD------NHLSPSRWKWSSKRGTSE 495

  Fly   487 KTTDREFVELEIPFNGQPKRPGSPSP 512
            .:::|.|    .|..|.|.:..:.||
Zfish   496 TSSNRSF----NPDQGSPSKARASSP 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 51/152 (34%)
Ion_trans 188..415 CDD:395416 96/233 (41%)
DUF3399 445..540 CDD:403174 17/79 (22%)
kcnb1XP_021332945.1 BTB_2 36..135 CDD:308049 38/106 (36%)
Ion_trans 191..427 CDD:306908 97/239 (41%)
Kv2channel 470..712 CDD:308887 13/58 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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