DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and Shab

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_001189037.1 Gene:Shab / 38352 FlyBaseID:FBgn0262593 Length:1607 Species:Drosophila melanogaster


Alignment Length:575 Identity:183/575 - (31%)
Similarity:278/575 - (48%) Gaps:95/575 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PPPPMPKDRRKTDDEKLLINVSGRRFET-WRNTLEKYPDTLLGSNEREFFYD---EDC------- 80
            ||.|....:.|..:.::.|||.|.|.|. || |||:.|.|.||.......::   |.|       
  Fly   293 PPEPFMIAQSKAVNSRVSINVGGVRHEVLWR-TLERLPHTRLGRLRECTTHEAIVELCDDYSLAD 356

  Fly    81 KEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRK---- 141
            .||||||.|..|..|||:|||||||.....|:.::.::|.::|:....:..||...|..||    
  Fly   357 NEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVH 421

  Fly   142 ---RENAERLMDDKLSENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMANV 203
               |:.||.|......|.|:   .:....::.:|...|.|:||.:|.|...::..||.:|.:|..
  Fly   422 EEMRKEAESLRQRDEEEFGE---GKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALT 483

  Fly   204 VETVP-CGHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDV 267
            :.|:| ..|...  ||.....:..:|    :..|:..||.||:||..|:||:.||.:..::|||:
  Fly   484 LNTLPQLQHIDN--GTPQDNPQLAMV----EAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDL 542

  Fly   268 VAIMPYYIGLGITDND--------DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASEL 324
            :||:||::.|.:.:.:        ||.......|:.|:.||.|.:|||.||:.||:||::...||
  Fly   543 LAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL 607

  Fly   325 GFLVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGV 389
            |.|:..|||.::||:::.::|||:...|.|.|||..||:..:||||:||||:.|.|..||::|.|
  Fly   608 GLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV 672

  Fly   390 CSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSKKKAAEAR 454
            |.:.||||||||:|:||:||:..|....|.:|...:|:|                          
  Fly   673 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREA-------------------------- 711

  Fly   455 WAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTDREFVELEIPFNGQP-------KRPGSPS- 511
                     ||...|:..|....|.:|.....|:.|  .:::.:....|.       ||..:|: 
  Fly   712 ---------LDRAKREGSIVSFHHINLKDAFAKSMD--LIDVIVDTGKQTNVVHPKGKRQSTPNI 765

  Fly   512 ------PMASPAHST-----NSAAGLLQSCCGRCCSQRYQACGKYMPAASNAQNS 555
                  ..::|.|:.     ||..|  :|..||..:.....|.|.....:|.:||
  Fly   766 GRQTLDVQSAPGHNLSQTDGNSTEG--ESTSGRNPATTGTGCYKNYDHVANLRNS 818

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 48/134 (36%)
Ion_trans 188..415 CDD:395416 94/235 (40%)
DUF3399 445..540 CDD:403174 20/113 (18%)
ShabNP_001189037.1 BTB 309..416 CDD:197585 41/107 (38%)
BTB_2 309..408 CDD:280393 38/99 (38%)
Ion_trans 501..700 CDD:278921 85/202 (42%)
Ion_trans_2 613..696 CDD:285168 43/82 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
43.910

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