DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and KCNC2

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_631875.1 Gene:KCNC2 / 3747 HGNCID:6234 Length:638 Species:Homo sapiens


Alignment Length:585 Identity:179/585 - (30%)
Similarity:277/585 - (47%) Gaps:142/585 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 DDEKLLINVSGRRFETWRNTLEKYPDT---LLGSNEREFFYDEDC-------------------- 80
            ::|::::||.|.|.||:|:||:..|.|   ||.|:|.    ..||                    
Human     6 NNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEP----PGDCLTTAGDKLQPSPPPLSPPPR 66

  Fly    81 ---------------------------------KEYFFDRDPDIFRHILNYYRTGKLHYPKHECL 112
                                             :|:||||.|.:|.::||||||||||.|...|.
Human    67 APPLSPGPGGCFEGGAGNCSSRGGRASDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPADVCG 131

  Fly   113 TSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLMD--------------------------D 151
            ..::|||||:||....:..||:..||..:  :||..:|                          |
Human   132 PLFEEELAFWGIDETDVEPCCWMTYRQHR--DAEEALDIFETPDLIGGDPGDDEDLAAKRLGIED 194

  Fly   152 KLSENG-DQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMANVVET------VPC 209
            .....| |....:...::.:||..||:|::|.:|....:.:.|||.||:....:||      |..
Human   195 AAGLGGPDGKSGRWRRLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNIVKN 259

  Fly   210 GHRPGRAGTLPCGERYKI----VFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAI 270
            ...|...|| ....:|:|    ....::..||:.||.|:|:|:..:|::.:|::::::|||.|||
Human   260 KTEPVINGT-SVVLQYEIETDPALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFVAI 323

  Fly   271 MPYYIGLGITD-----NDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFS 330
            :|:|:.:|::.     ..||.|....:|..|:.||||.:||..|||:||:||::..:|...|:..
Human   324 LPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIF 388

  Fly   331 LAMAIIIFATVMFYAEK---------NVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIV 386
            ||:.::||||:::|||:         ....|.|.:||..||:.:|||||||||||.|:|.:|.:|
Human   389 LALGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLV 453

  Fly   387 GGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSKKKAA 451
            |.:|:|:|||.||:||||||:||...|  :....|:|..|| |...|..|..:|...|..    .
Human   454 GALCALAGVLTIAMPVPVIVNNFGMYY--SLAMAKQKLPRK-RKKHIPPAPQASSPTFCK----T 511

  Fly   452 EARWAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTDREFVELEIPFNGQPKRPGSPSPMASP 516
            |...|...:   ..|....:|...|:|:..:...:.:|                  ||..|::.|
Human   512 ELNMACNST---QSDTCLGKDNRLLEHNRSVLSGDDST------------------GSEPPLSPP 555

  Fly   517  516
            Human   556  555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 48/160 (30%)
Ion_trans 188..415 CDD:395416 98/250 (39%)
DUF3399 445..540 CDD:403174 11/72 (15%)
KCNC2NP_631875.1 BTB_KCNC2_4 7..166 CDD:349722 50/164 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 38..93 4/58 (7%)
Ion_trans 228..484 CDD:395416 99/258 (38%)
Selectivity filter. /evidence=ECO:0000250 437..442 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 538..572 5/36 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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