DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnd3

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_005167059.1 Gene:kcnd3 / 327415 ZFINID:ZDB-GENE-030131-5626 Length:650 Species:Danio rerio


Alignment Length:579 Identity:375/579 - (64%)
Similarity:449/579 - (77%) Gaps:41/579 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ASVAAWLPFARAAAIGWVPIATHPLPPPPMPKDRRKTDDEKLLINVSGRRFETWRNTLEKYPDTL 66
            |.|||||||||||||||:|:|..|:|..|..|::|:  ||.:::|||||||:||||||::|||||
Zfish     3 AGVAAWLPFARAAAIGWMPVANLPMPVAPSNKNKRQ--DELIILNVSGRRFQTWRNTLDRYPDTL 65

  Fly    67 LGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGD 131
            |||:|:|||::|:.:|||||||||:||.|||:|||||||||::||:::||||||||||:|::|.|
Zfish    66 LGSSEKEFFFNEETREYFFDRDPDVFRSILNFYRTGKLHYPRYECISAYDEELAFFGIIPEIISD 130

  Fly   132 CCYEDYRDRKRENAERLMDDKLSENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIA 196
            ||||:|:||||||.|||||| |.:|.|..|..:| .|:.||||||||||||.|||||||||||||
Zfish   131 CCYEEYKDRKRENTERLMDD-LEDNKDSKLPNMT-FRETMWRAFENPHTSTMALVFYYVTGFFIA 193

  Fly   197 VSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSV 261
            :||:.|||||||||:.|.:. .:||||||...|||:|||||||||.|||:||||||.|.:|:|||
Zfish   194 LSVITNVVETVPCGYMPNQR-DVPCGERYTEAFFCMDTACVMIFTVEYLMRLFAAPSRYRFMRSV 257

  Fly   262 MSIIDVVAIMPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGF 326
            |||||||||:||||||.:|:|:|||||||||||||||||||||||||||||||||||||||||||
Zfish   258 MSIIDVVAILPYYIGLVMTNNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGF 322

  Fly   327 LVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCS 391
            |:|||.|||||||||||||||..:.:.||||||:||||||||||||||||||:||||||.|.:||
Zfish   323 LLFSLTMAIIIFATVMFYAEKGSSSSKFTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFGSICS 387

  Fly   392 LSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQR--KARLARIRIAKASSGAAFVSKKKAA--- 451
            ||||||||||||||||||||||||||||||||||:  ||||||:||:|:.|..||:..|:..   
Zfish   388 LSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQKVQKARLARMRISKSGSSTAFLHSKRNGLNQ 452

  Fly   452 ----------EARWAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTDREFVELEIPFNGQPKR 506
                      :.:.:.|.|..|.....:...:.|.||||||.||||||:.|||:..:...|..:.
Zfish   453 SLELTQLPYYKMKLSPQGSLEEDQQLKKTTSLLESQHHHLLHCLEKTTNHEFVDERLYEQGYLQT 517

  Fly   507 PGSPSPMASPAHSTNSAAGLLQSCCGRCCSQRYQACGKYMPAASNAQNSQNNQPMDGTY 565
            .....|..||  |.:|..|:    .|.|||:|               ..:|.||::.|:
Zfish   518 ALQNFPSQSP--SLSSEEGI----TGTCCSRR---------------PKKNIQPLNATH 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 95/137 (69%)
Ion_trans 188..415 CDD:395416 187/226 (83%)
DUF3399 445..540 CDD:403174 32/107 (30%)
kcnd3XP_005167059.1 Shal-type 3..28 CDD:288455 19/24 (79%)
BTB 42..139 CDD:197585 69/96 (72%)
BTB_2 42..131 CDD:280393 63/88 (72%)
Ion_trans 213..411 CDD:278921 166/198 (84%)
Ion_trans_2 327..407 CDD:285168 67/79 (85%)
DUF3399 443..556 CDD:288712 36/134 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594783
Domainoid 1 1.000 399 1.000 Domainoid score I703
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 747 1.000 Inparanoid score I557
OMA 1 1.010 - - QHG48930
OrthoDB 1 1.010 - - D221939at33208
OrthoFinder 1 1.000 - - FOG0001867
OrthoInspector 1 1.000 - - otm25710
orthoMCL 1 0.900 - - OOG6_103639
Panther 1 1.100 - - LDO PTHR11537
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4179
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.900

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