DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and Kcna5

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_037104.1 Gene:Kcna5 / 25470 RGDID:2953 Length:602 Species:Rattus norvegicus


Alignment Length:555 Identity:189/555 - (34%)
Similarity:287/555 - (51%) Gaps:108/555 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 PLPP--PPMPKDRR-KTDDE--------------------------KLLINVSGRRFETWRNTLE 60
            ||||  ..:|:.|| ..:||                          ::|||:||.||||...||.
  Rat    66 PLPPMAQELPQPRRLSAEDEEGEGDPGLGTVEEDQAPQDAGSLHHQRVLINISGLRFETQLGTLA 130

  Fly    61 KYPDTLLGS-NEREFFYDEDCKEYFFDRDPDIFRHILNYYRT-GKLHYPKHECLTSYDEELAFFG 123
            ::|:||||. .:|..::|....||||||:...|..||.||:: |:|..|.:..|..:.:|:.|: 
  Rat   131 QFPNTLLGDPAKRLHYFDPLRNEYFFDRNRPSFDGILYYYQSGGRLRRPVNVSLDVFADEIRFY- 194

  Fly   124 IMPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFY 188
                .:||...|.:|:          |:...:..::.|.: ...::::|..||.|.:|.||....
  Rat   195 ----QLGDEAMERFRE----------D
EGFIKEEEKPLPR-NEFQRQVWLIFEYPESSGSARAIA 244

  Fly   189 YVTGFFIAVSVMANVVETVP--------CGHRP--------------GRAGTLPCGERYKIV--- 228
            .|:...|.:|::...:||:|        ..|.|              ..:|.|..|.....:   
  Rat   245 IVSVLVILISIITFCLETLPEFRDERELLRHPPVPPQPPAPAPGINGSVSGALSSGPTVAPLLPR 309

  Fly   229 -----FFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIGLGIT-------- 280
                 ||.::|.||:.||.|.|:|.||.|.:.:|.|::|:|||||||.||:|.||..        
  Rat   310 TLADPFFIVETTCVIWFTFELLVRFFACPSKAEFSRNIMNIIDVVAIFPYFITLGTELAEQQPGG 374

  Fly   281 --DNDDVSGAFVTLRVF---RVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFAT 340
              .|...:.:...|||.   |||||||.||||:||:|||.||::...|||.|:|.|.:.:|:|::
  Rat   375 GGQNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASMRELGLLIFFLFIGVILFSS 439

  Fly   341 VMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVI 405
            .:::||.:.:|::|:|||.|||:.:|||||:|||||.|.|:.|||||.:|:::|||.||||||||
  Rat   440 AVYFAEADNHGSHFSSIPDAFWWAVVTMTTVGYGDMRPITVGGKIVGSLCAIAGVLTIALPVPVI 504

  Fly   406 VSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSKKKAAEARWAAQESGIELDDNYRD 470
            ||||:..||:....:::.|.::.:..:.|.:...:|..  .|...::|.:......:|..|:.| 
  Rat   505 VSNFNYFYHRETDHEEQAALKEEQGNQRRESGLDTGGQ--RKVSCSKASFCKTGGSLESSDSIR- 566

  Fly   471 EDIFELQHHHL-------LR------CLEKTTDRE 492
            .....|:..||       ||      ||:  |.||
  Rat   567 RGSCPLEKCHLKAKSNVDLRRSLYALCLD--TSRE 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 48/149 (32%)
Ion_trans 188..415 CDD:395416 113/269 (42%)
DUF3399 445..540 CDD:403174 15/61 (25%)
Kcna5NP_037104.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 58..107 9/40 (23%)
BTB 113..207 CDD:197585 39/108 (36%)
BTB_2 113..204 CDD:280393 38/95 (40%)
Ion_trans 305..515 CDD:278921 103/209 (49%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 407..420 7/12 (58%)
Ion_trans_2 429..506 CDD:285168 42/76 (55%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 469..474 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 523..543 3/21 (14%)
PDZ-binding 600..602 189/555 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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