DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and Kcnq5

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_001153611.1 Gene:Kcnq5 / 226922 MGIID:1924937 Length:952 Species:Mus musculus


Alignment Length:339 Identity:81/339 - (23%)
Similarity:143/339 - (42%) Gaps:65/339 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 LMDDKLSENGDQNLQQLTNMRQ---KMWRAFENP-------HTSTSALVFYYVTGFFIAVSVMAN 202
            |:...||....|:.::....|:   .::...|.|       |    |.||..|.|..|     .:
Mouse    90 LLGKPLSYTSSQSCRRNVKYRRVQNYLYNVLERPRGWAFVYH----AFVFLLVFGCLI-----LS 145

  Fly   203 VVETVPCGHRPGRAGTLPCGERYKIVFFC---LDTACVMIFTAEYLLRLFAA---------PDRC 255
            |..|:|              |..|:...|   |:...:::|..|:::|:::|         ..|.
Mouse   146 VFSTIP--------------EHTKLASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRL 196

  Fly   256 KFVRSVMSIIDVVAIMP--YYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLK 318
            :|.|....:||.:.::.  ..:......|...:.|..:||..::.|:.:..|.....::||..:.
Mouse   197 RFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVY 261

  Fly   319 SCASEL------GFLVFSLAMAIIIFATVMFY-AEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDM 376
            :.:.||      ||||       :||::.:.| .||:.| ..|::...|.|:..:|:||:||||.
Mouse   262 AHSKELITAWYIGFLV-------LIFSSFLVYLVEKDAN-KEFSTYADALWWGTITLTTIGYGDK 318

  Fly   377 VPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSG 441
            .|.|..|:::....:|.|:...|||..::.|.|: :..|.|...|...:|:...|.:......|.
Mouse   319 TPLTWLGRLLSAGFALLGISFFALPAGILGSGFA-LKVQEQHRQKHFEKRRNPAANLIQCVWRSY 382

  Fly   442 AAFVSKKKAAEARW 455
            ||  .:|..:.|.|
Mouse   383 AA--DEKSVSIATW 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727
Ion_trans 188..415 CDD:395416 59/247 (24%)
DUF3399 445..540 CDD:403174 3/11 (27%)
Kcnq5NP_001153611.1 Ion_trans 161..359 CDD:278921 51/206 (25%)
Ion_trans_2 275..349 CDD:285168 27/81 (33%)
Selectivity filter. /evidence=ECO:0000250 312..317 3/4 (75%)
KCNQ_channel 473..660 CDD:281513
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 597..617
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 897..952
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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