DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and shw-3

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_001355445.1 Gene:shw-3 / 191761 WormBaseID:WBGene00004793 Length:500 Species:Caenorhabditis elegans


Alignment Length:452 Identity:156/452 - (34%)
Similarity:241/452 - (53%) Gaps:63/452 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 DDE-KLLINVSGRRFETWRNTLEKYPDTLLG------SNEREFFYDEDCKEYFFDRDPDIFRHIL 96
            |.| ::::||.|.|.||:::||:|.|.|.|.      :|     ||....||||||.|.:|..||
 Worm    23 DSEYRIILNVGGVRHETYKHTLKKIPATRLSRLTTNLAN-----YDPVLNEYFFDRHPGVFAQIL 82

  Fly    97 NYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYR-DRKRENAERLMDDKLSENGDQ- 159
            |||||||||||...|...::|||.::|:..:....||:.... .|..::..:.:|: |....|| 
 Worm    83 NYYRTGKLHYPLDVCGPLFEEELKYWGLDSNECEPCCWMTLSGTRDTQDVLKTLDE-LDIEVDQT 146

  Fly   160 ------------------NLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMA----- 201
                              :|.....::.::||.|:.|::|.||.....::.||:..:::.     
 Worm   147 EGPELYKRFGWEDDYHNDSLSAWQKIKPRIWRLFDEPNSSRSAQFIAAISVFFLITAIIVFCLKT 211

  Fly   202 ----NVVETVPCG-----HR-------PGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFA 250
                .:.|..|.|     ||       |.:........|....|..::|.|.:.||.|.|.|..:
 Worm   212 HPGLRIPELAPFGNFSRNHRSTSSRIHPAQINIDKANSRPHPTFMYIETICNIWFTIEILARFSS 276

  Fly   251 APDRCKFVRSVMSIIDVVAIMPYYIGLGITDNDDVSGAFVTLRVF---RVFRIFKFSRHSQGLRI 312
            .|.|.:::|:.::|||:||.:.:||.|    ...:.||...|..|   |:.|:||.:.|:.||:|
 Worm   277 CPSRFEYLRAPVNIIDIVATLTFYIDL----LSSMFGATADLEFFSIIRIMRLFKLTHHNSGLKI 337

  Fly   313 LGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEK-NVNGTN-FTSIPAAFWYTIVTMTTLGYGD 375
            |.:|.::.|.||..|||.|.:.:::||::::|||: ..|..| |.|||...|:.||||||:||||
 Worm   338 LMHTFRASAKELMLLVFFLVLGVVVFASLVYYAERVESNEDNQFVSIPIGLWWAIVTMTTIGYGD 402

  Fly   376 MVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAK 437
            :.|.|..|:::|.:|:|:|||.||||||||||||:..|...|...|...:|:..|:..::|:
 Worm   403 ITPHTYLGRLIGSICALAGVLTIALPVPVIVSNFAMFYSHTQARSKMPKKRRGVLSMDQVAQ 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 46/112 (41%)
Ion_trans 188..415 CDD:395416 93/252 (37%)
DUF3399 445..540 CDD:403174
shw-3NP_001355445.1 BTB_POZ 25..136 CDD:365784 45/115 (39%)
Ion_trans 257..444 CDD:366146 83/190 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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