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Protein Alignment Shal and sup-9

DIOPT Version :10

Sequence 1:	NP_001097646.1	Gene:	Shal / 40129	FlyBaseID:	FBgn0005564	Length:	571	Species:	Drosophila melanogaster
Sequence 2:	NP_494333.1	Gene:	sup-9 / 173613	WormBaseID:	WBGene00006318	Length:	329	Species:	Caenorhabditis elegans

Alignment Length:	404	Identity:	80/404 - (19%)
Similarity:	136/404 - (33%)	Gaps:	149/404 - (36%)

- Green bases have known domain annotations that are detailed below.

  Fly   143 ENAERLMDDKLSENGDQNLQQLTNMRQKMWRAFEN------PHTS----TSALVFYYVTGFFIAV 197
            |....::..||.:...:.|:...||....:...|.      ||.:    ..:..||:.|
Worm    30 ETENEILQRKLVQRVREKLKTKYNMSNADYEILEATIVKSVPHKAGYQWKFSGAFYFAT------ 88

  Fly   198 SVMANVVETVPCGHRPGRAGTLPCGERYKIVFFC-------LDTACVMIFTAEYLLRLFAAPDRC 255
                .|:.|:..||      :.|..:..|:  ||       :....:|..:....:..||| ...
Worm    89 ----TVITTIGYGH------STPMTDAGKV--FCMLYALAGIPLGLIMFQSIGERMNTFAA-KLL 140

  Fly   256 KFVRSVMSIIDVVAIMPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320
            :|:|.......:|           |.:|        |.:|                        |
Worm   141 RFIRRAAGKQPIV-----------TSSD--------LIIF------------------------C 162

  Fly   321 ASELGFLVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMV-------- 377
            ....|.|:|..|.        ||.:.:  |.|.|.::    :|..||:||:|:||.|
Worm   163 TGWGGLLIFGGAF--------MFSSYE--NWTYFDAV----YYCFVTLTTIGFGDYVALQKRGSL 213

  Fly   378 ---PETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKAS 439
               ||.:...:   |..|.|:.||:..:.::|..|..:..:::|.|:::|...|: ..:|:...:
Worm   214 QTQPEYVFFSL---VFILFGLTVISAAMNLLVLRFLTMNTEDERRDEQEAILAAQ-GLVRVGDPT 274

  Fly   440 SGAAFVSKKKAAEARWAAQESGIELDDN--------YR--DEDIFELQHHHLLRCLEKTTDREFV 494
            :...|               ..:.|.||        |:  ||   :|:|.|          |:..
Worm   275 ADDDF---------------GRLPLSDNVSLASCSCYQLPDE---KLRHRH----------RKHT 311

  Fly   495 ELEIPFNGQPKRPG 508
            |   |..|.|...|
Worm   312 E---PHGGPPTFSG 322

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.