DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and Kcnq2

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_017171224.1 Gene:Kcnq2 / 16536 MGIID:1309503 Length:937 Species:Mus musculus


Alignment Length:456 Identity:95/456 - (20%)
Similarity:171/456 - (37%) Gaps:126/456 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 MWRAFENP-------HTSTSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIV 228
            ::...|.|       |.....|||     ..:.:||.:.:.|     :.....|.|         
Mouse    81 LYNVLERPRGWAFIYHAYVFLLVF-----SCLVLSVFSTIKE-----YEKSSEGAL--------- 126

  Fly   229 FFCLDTACVMIFTAEYLLRLFAA---------PDRCKFVRSVMSIIDVVAIMP--YYIGLGITDN 282
             :.|:...:::|..||.:|::||         ..|.||.|....:||::.::.  ..:..|...|
Mouse   127 -YILEIVTIVVFGVEYFVRIWAAGCCCRYRGWRGRLKFARKPFCVIDIMVLIASIAVLAAGSQGN 190

  Fly   283 DDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASEL------GFLVFSLAMAIIIFATV 341
            ...:.|..:||..::.|:.:..|.....::||..:.:.:.||      |||      .:|:.:.:
Mouse   191 VFATSALRSLRFLQILRMIRMDRRGGTWKLLGSVVYAHSKELVTAWYIGFL------CLILASFL 249

  Fly   342 MFYAEKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIV 406
            ::.|||..| .:|.:...|.|:.::|:||:||||..|:|..|:::....:|.||...|||..::.
Mouse   250 VYLAEKGEN-DHFDTYADALWWGLITLTTIGYGDKYPQTWNGRLLAATFTLIGVSFFALPAGILG 313

  Fly   407 SNFS---RIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSKKKAAEARWAAQESGIELDDNY 468
            |.|:   :..|:.:..:||:               :..|..:      ::.|....:.:...|.:
Mouse   314 SGFALKVQEQHRQKHFEKRR---------------NPAAGLI------QSAWRFYATNLSRTDLH 357

  Fly   469 RDEDIFE-----------------------LQHHHLLRCLEKTTDREFVELEIPFNGQPKRPGSP 510
            .....:|                       |....|||.|:..:.       :.|..:|:...||
Mouse   358 STWQYYERTVTVPMYSSQTQTYGASRLIPPLNQLELLRNLKSKSG-------LTFRKEPQPEPSP 415

  Fly   511 SPMASPAHSTNSAAGLLQSCCGRCCSQRYQ-------------ACGKYMPAASNAQNSQN-NQPM 561
            |       ......|.|..||....||:..             |.||..|.|...:.|.: :|.:
Mouse   416 S-------KGRPCRGCLCGCCPGHSSQKVSLKDRVFSSPRGMAAKGKGSPQAQTVRRSPSADQSL 473

  Fly   562 D 562
            |
Mouse   474 D 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727
Ion_trans 188..415 CDD:459842 58/246 (24%)
DUF3399 471..535 CDD:463381 15/86 (17%)
Kcnq2XP_017171224.1 Ion_trans 92..324 CDD:459842 62/258 (24%)
KCNQ_channel 466..719 CDD:460954 3/9 (33%)
KCNQ2_u3 733..821 CDD:465213
KCNQC3-Ank-G_bd 833..933 CDD:463411
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.