DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and Kcnc1

DIOPT Version :9

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_006540709.1 Gene:Kcnc1 / 16502 MGIID:96667 Length:594 Species:Mus musculus


Alignment Length:462 Identity:163/462 - (35%)
Similarity:249/462 - (53%) Gaps:73/462 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 DDEKLLINVSGRRFETWRNTLEKYPDTLLG-----SNEREFFYDEDCKEYFFDRDPDIFRHILNY 98
            :.|:::|||.|.|.:|:|:||...|.|.|.     .....|.||....|:||||.|.:|.|||||
Mouse     6 ESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNY 70

  Fly    99 YRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLMD------------- 150
            |||||||.|...|...|:|||||:||....:..||:..||..:  :||..:|             
Mouse    71 YRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHR--DAEEALDSFGGAPLDNSADD 133

  Fly   151 ---DKLSENGD-QNLQQLT------------------NMRQKMWRAFENPHTSTSALVFYYVTGF 193
               |...::|| ::..::|                  ..:.::|..||:|::|..|....:.:.|
Mouse   134 ADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLF 198

  Fly   194 FIAVSVMANVVET----VPCGHRPG----RAGTLPCGERY------KIVFFCLDTACVMIFTAEY 244
            ||.||:....:||    .|..::..    |.||   ..||      :.....::..||:.||.|:
Mouse   199 FILVSITTFCLETHERFNPIVNKTEIENVRNGT---QVRYYREAETEAFLTYIEGVCVVWFTFEF 260

  Fly   245 LLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIGLGITD-----NDDVSGAFVTLRVFRVFRIFKFS 304
            |:|:...|::.:|:::.::|||.|||:|:|:.:|::.     ..||.|....:|..|:.||||.:
Mouse   261 LMRVVFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLT 325

  Fly   305 RHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEK---------NVNGTNFTSIPAA 360
            ||..|||:||:||::..:|...|:..||:.::||||:::|||:         ....|:|.:||..
Mouse   326 RHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIG 390

  Fly   361 FWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQ 425
            ||:.:|||||||||||.|:|.:|.:||.:|:|:|||.||:||||||:||...|.......|...:
Mouse   391 FWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKK 455

  Fly   426 RKARLAR 432
            :|..:.|
Mouse   456 KKKHIPR 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 49/109 (45%)
Ion_trans 188..415 CDD:395416 98/254 (39%)
DUF3399 445..540 CDD:403174
Kcnc1XP_006540709.1 BTB_KCNC1_3 6..122 CDD:349721 52/117 (44%)
Ion_trans 189..447 CDD:366146 99/260 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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